Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3826g00021 ATGGGGGAAGAAAAGCAACGCAGCGTGCCGGTTTTGCCATGGATGCGAGACCCCATTGAAGTCACTCTCTGTCAAGAACTCCCTCTTGATTGCGTTCCTTGCCTGCACCCTACGTTGAAATTGGGATTGGAGAATATAGGGATCTCTAAGCTATTCCCAGTGCAAGTTGCGGTTTGGCAAGAAACAATTGGGCCTGGTAATTTCGAACGAGACATTTGTGTAAATTCCCCCACCGGAAGCGGCAAAACCTTGGCATATGCACTCCCAATAGTGCAAATGCTATCGAGCCGCGTTGTTAGGTGCCTCCGTGCTCTGGTGGTGGTCCCCACTCGCGATCTCGCCTTGCAGGTTAAACAAGTTTTTGATGGCATTGCATCCCCACTGGGCTTGCGTGTTGGCTTGGCTGTTGGTCAATCTTCCATAGCTGATGAGATTTCTAACCTTGTATACATTCCTCAATATGAGGCAGGCATGTGCTGTGATCCACGTGATAAACGTGGTTTCCAAAGTAAGGTTGACATATTAGTAGCAACCCCTGGAAGGCTCATGGATCATATTAATACTACTAAAGGCTTCACACTTGAGCACCTTTATTATCTTGTGGTTGATGAAACAGATCGACTACTTCGGGAGGCCTATCAATCTTGGCTACCTACCGTGCTTGAATTGACCCAATCTGAGGATGATAATATTTATCAACCGGCTGATTCTGTTTTCCCTTATTCTCTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGCTTCAAGGATAAGCCTTACCCTAGGCTGGCAAAGATGGTTCTATCTGCGACATTAACTCAAGACCCAGGCAGGCTTGTTCGGCTTAATTTGCGTCATCCTTTATTTCTGAGAGCTGGGCAAATGCGTTATCGGCTACCTGAAAATTTGGAATCTTACAAACTGATCTGTGAAACAAAGGTTAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGGAGAAAAATGCATAGTTTTTACAAAGTCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAACGAATTCCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACACTGATGTCAACAGATGAGGTTCGACGATTTAAAAAATTGATGCGAAAGGCTGAGGCTAGTTCTTTCCTTGAGCATACTCTTCCATCTAGTTTGATTGAAGCACTTCATACTACCTACCAATCAGCACTGGAAAAATTTAAGGAGATAATTTTGGAGACACGAAAGAAACCCAAGGATTAG 1488 0.4415 MGEEKQRSVPVLPWMRDPIEVTLCQELPLDCVPCLHPTLKLGLENIGISKLFPVQVAVWQETIGPGNFERDICVNSPTGSGKTLAYALPIVQMLSSRVVRCLRALVVVPTRDLALQVKQVFDGIASPLGLRVGLAVGQSSIADEISNLVYIPQYEAGMCCDPRDKRGFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQSEDDNIYQPADSVFPYSLGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLVRLNLRHPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVDSTHRLCKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSTDEVRRFKKLMRKAEASSFLEHTLPSSLIEALHTTYQSALEKFKEIILETRKKPKD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3826g00021 495 CDD DEADc_DDX51 43 293 - -
Gabi3826g00021 495 Gene3D - 304 495 IPR027417 -
Gabi3826g00021 495 Pfam Helicase conserved C-terminal domain 318 429 IPR001650 -
Gabi3826g00021 495 Pfam DEAD/DEAH box helicase 53 279 IPR011545 GO:0003676|GO:0005524
Gabi3826g00021 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 471 IPR001650 -
Gabi3826g00021 495 Gene3D - 18 296 IPR027417 -
Gabi3826g00021 495 SMART ultradead3 47 309 IPR014001 -
Gabi3826g00021 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 450 IPR027417 -
Gabi3826g00021 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 293 IPR014001 -
Gabi3826g00021 495 SMART helicmild6 345 429 IPR001650 -
Gabi3826g00021 495 CDD SF2_C_DEAD 306 437 - -
Gabi3826g00021 495 PANTHER RNA HELICASE 35 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3826g00021 Gabi-Chr3826 447258 460784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3826g00021 35 471 Eukaryotic Initiation Factors Gene Family AT1G72730 24.829 3.14e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3826g00021 K14807 - qsa:O6P43_013012 743.806