Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3826g00020 ATGGTTTTATTGGATGAACAGGGTGGTAGGATCCACGCCACTGTCAAAGACGTCATTGTTTTAATCTCAGGAATTGGGAAAGTTTGTGATCGTGTGATTTCTGGTAGGAAGACAAAAATGGTGGTGTTGGAGCTTGACGACCTGAGGGGTCATAAGTTGGAGTGCACTTTGTGGGAGCATTATGTGGATGAGGTCCAATCTTTTTTGGCAGACAACGACGATCCTCATAACGTCCTAATAGTCCAATTGGGAAGGATTAAGTGTTTTAGATGTAAGGTCGGGATAACAAATACAAAATATACAACAAGGATTGTAATGGATTCAAAACTGAATGAGATTGTTGAGTTCAAAAAACGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGGATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGATTGAAAAAAGTCTATCAGTAACTACCTGCATCACATACGGGACTATAAAGGCAATTGAGAGCAAATACAATTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGGATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTCTTTGTTGGGAATGAGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGATATGCAAATAGCAAATGATGCTTTAGTACAATCACCTGTGGTGCCCAAATATTTTGTTTTTTTTGCCCATGCAATTCTTACAGAAGAGTCTATAAAAAACATAACTCTTGAAGAAATTGATAAGGTACTGCAGAGCAATGGGAAATGCCTCTCTGATTATCCGTCAATGCCACGCATCAATAGTGAAACTTTGCTTGATATGCAAAATCGATTAGTGTTGGATGAATTAATGTATGACAGATTTGCTTTGGAAGAGGAACATAAAAGACTAATTAATTCCCTCACTGATGAGCAGAAAACTGTTTATGATAAAATTATTTCAGCAGTTACGGCAGGTAATAGAGGGTTATTTTTCCTATACGGGTTCGGTGGTACAGGAAAAACATTTATTTGGAATACTCTTTCAGCATCTATTAGATCAAAAGCTGGAATCGTACTTAATGTTGCTTCTAGCGGAATTGCTTCCCTTCTGCTTCCTGGAGGATGA 1281 0.3841 MVLLDEQGGRIHATVKDVIVLISGIGKVCDRVISGRKTKMVVLELDDLRGHKLECTLWEHYVDEVQSFLADNDDPHNVLIVQLGRIKCFRCKVGITNTKYTTRIVMDSKLNEIVEFKKRLSIDGVESSTRMTQLSTQSSYSFENDFLKEIEKSLSVTTCITYGTIKAIESKYNWWYKSCKKCPFSVYEDFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVSLLGMSAAELRELHFKRGADLDQFPNELNVLNDMQIANDALVQSPVVPKYFVFFAHAILTEESIKNITLEEIDKVLQSNGKCLSDYPSMPRINSETLLDMQNRLVLDELMYDRFALEEEHKRLINSLTDEQKTVYDKIISAVTAGNRGLFFLYGFGGTGKTFIWNTLSASIRSKAGIVLNVASSGIASLLLPGG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3826g00020 426 CDD RPA1_DBD_C 159 260 IPR047192 -
Gabi3826g00020 426 SUPERFAMILY Nucleic acid-binding proteins 15 125 IPR012340 -
Gabi3826g00020 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 419 IPR027417 -
Gabi3826g00020 426 PANTHER UNCHARACTERIZED 252 426 - -
Gabi3826g00020 426 SUPERFAMILY Nucleic acid-binding proteins 157 259 IPR012340 -
Gabi3826g00020 426 CDD RPA1_DBD_B_like 17 120 - -
Gabi3826g00020 426 Gene3D - 331 426 IPR027417 -
Gabi3826g00020 426 Gene3D - 7 124 IPR012340 -
Gabi3826g00020 426 Gene3D - 125 284 IPR012340 -
Gabi3826g00020 426 Pfam PIF1-like helicase 359 426 IPR010285 GO:0000723|GO:0003678|GO:0006281
Gabi3826g00020 426 Pfam Replication factor-A C terminal domain 161 258 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3826g00020 Gabi-Chr3826 425048 427717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3826g00020 2 260 Core DNA Replication Machinery Family AT5G08020 24.101 5.31e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3826g00020 - - ahf:112707100 177.563