Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3825g00009 ATGACCGTTTACATTCTAACCGTACACTGGTCTGAGGCGGTTGTAACAAATATACTGAAACAAATGGGTGTGGTGTTTTCAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCAATGCGGTTATTGCAAATAATGTTAACACTAATGGCCGGTTGACATCAGGAGATAGCCGCTATCAAATGAAATAA 417 0.4173 MTVYILTVHWSEAVVTNILKQMGVVFSVTSEVVKPVNMYGGDTSKGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEITAELANHGNISEKNVCNWFQNKRARSKKKQPNAVIANNVNTNGRLTSGDSRYQMK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3825g00009 138 Pfam Homeodomain 51 111 IPR001356 GO:0003677
Gabi3825g00009 138 MobiDBLite consensus disorder prediction 110 138 - -
Gabi3825g00009 138 ProSiteProfiles 'Homeobox' domain profile. 47 112 IPR001356 GO:0003677
Gabi3825g00009 138 CDD homeodomain 51 113 IPR001356 GO:0003677
Gabi3825g00009 138 PANTHER WUSCHEL-RELATED HOMEOBOX 13 48 123 IPR044559 GO:0003700
Gabi3825g00009 138 SUPERFAMILY Homeodomain-like 50 116 IPR009057 -
Gabi3825g00009 138 Gene3D - 52 117 - -
Gabi3825g00009 138 SMART HOX_1 49 116 IPR001356 GO:0003677
Gabi3825g00009 138 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3825g00009 Gabi-Chr3825 63197 63613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3825g00009 40 133 Wox Gene Family AT1G20700 46.000 1.66e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3825g00009 Homeodomain 5.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3825g00009 - - ath:AT1G20700 92.4337