Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3823g00064 ATGAAGTATATTCGGACCAATAGCTTGAAGAAGCTCTTCTCGTTTGGAAGACGCAGTTATGGGGAAGAAAACGATGAGAGCTTGGTGATTCCTTCTCATGGAGAACACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAGCTCGGGAAATCTGGTTGGAAAAGGAGGGTATGCAAAGGTTTACAAGGGAAGACTGAATGGTGGTGAGGAAATTGCTGTGAAGAGGCTCACAAAAACTTCTAGGGATGATAGGAAGGAAAAGGAGTTTCTGACAGAGATTGGTACAATTGGTCATGTGCGCCATTCCAATGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTTTCCACCGTAGGCTCTGTTGCTTCTCTTATTCATGATGAGAAATTGCCTTCTGTGAATTGGAAAACAAGATATAAGATAGCTGTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCCAGAGAAGGATAATCCATAGGGACATCAAGGCTTCAAACATTCTATTGACAGAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAGTGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGTCATTTGGCACCTGAGTACTTTATGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTGTTCTTGCTAGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTTACCAAAGCTTGCACAGCTGGGCTAAACCAATATTGAACAAAGGGGAGACAGAAAAGTTGGCAGATCCAAGGCTTCAAGGGGTTTATGATGTGACACAGTTTAATAGACTTGCCTTTGCAGCTTCGTTGTGCATCCGGGCATCTTCAACTTGGCGACCTAGCATGAGCGAGGTATTAGAGGTAATGGAGGAGGGGGAGATGGATAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAGAAAGATGAGGAATTATGGGGTTTTGAGGATCTTGAATATGAATATGACAGTTCAGATTCAATGTCTCTACCTGACTCCAACCGTAGTACTTAG 1116 0.4391 MKYIRTNSLKKLFSFGRRSYGEENDESLVIPSHGEHPPRPSWKCFSYEELFDATNGFSSGNLVGKGGYAKVYKGRLNGGEEIAVKRLTKTSRDDRKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKLPSVNWKTRYKIAVGTARGLHYLHKGCQRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSYQSLHSWAKPILNKGETEKLADPRLQGVYDVTQFNRLAFAASLCIRASSTWRPSMSEVLEVMEEGEMDKEKWKMPEEEEKDEELWGFEDLEYEYDSSDSMSLPDSNRST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3823g00064 371 SUPERFAMILY Protein kinase-like (PK-like) 35 324 IPR011009 -
Gabi3823g00064 371 ProSiteProfiles Protein kinase domain profile. 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3823g00064 371 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3823g00064 371 Gene3D Transferase(Phosphotransferase) domain 1 135 350 - -
Gabi3823g00064 371 MobiDBLite consensus disorder prediction 328 342 - -
Gabi3823g00064 371 MobiDBLite consensus disorder prediction 328 347 - -
Gabi3823g00064 371 Gene3D Phosphorylase Kinase; domain 1 32 133 - -
Gabi3823g00064 371 PANTHER OS08G0249100 PROTEIN 33 353 IPR046958 -
Gabi3823g00064 371 FunFam Putative receptor-like serine/threonine-protein kinase 25 133 - -
Gabi3823g00064 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Gabi3823g00064 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gabi3823g00064 371 FunFam Putative receptor-like serine/threonine-protein kinase 135 348 - -
Gabi3823g00064 371 Pfam Protein tyrosine and serine/threonine kinase 60 273 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3823g00064 Gabi-Chr3823 579667 583685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3823g00064 45 329 Trihelix Transcription Factor Family AT1G70460 43.919 1.16e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3823g00064 PK_Tyr_Ser-Thr 4.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3823g00064 - - gmx:100801765 631.713