Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3823g00054 ATGGCATTTGAGGAATATGGGTTAAATGACGAGGTACTGAATATTGTTAGCCAGTTTGTTGGGGGCACCAGTCTAGAAATTCAGGAGAGATACAAAAGTATCAAGGAAAAGAATATTGGTAGGTTGGACCAGTATTCAGAAGGCTCAGGAGAATATGAATCTCCAATTGGCATATGTCCAGGGAAAAGCCTGGGTGCTGCATTAGATTCTTTTGATAACCTTTTCTGTCGCCGGTGCCTGCAGATTTTTGACTGTCGCCTGCATGGCTGTTCTCAACCTTTAACATATCCTAGTGAAAAGCAGACAGTTTGGTCTGAGCCTGAAGGTGACAGGAAACCATGCAGTGATCAGTGTTACCTTCAGCCGCAAGTCATACACAAAAAAAGGATAGGAGTTGGGAACGGATACAACATGCAGTACTCAGTCGTAGCCACACCAGAGAGCACACAAAATGGAAGAATAAAGCATGGGCAGTTAAAGGTTGTCAAACGTTTGTCAGAAGATTCAACTCCTGGGTCTTTTCAGGATAAGAAAACTGCAATTATGGAAGAGGAAGATGGGATATTGGCAACCTCTGGTGCAGCAGAACCTGGTAATCAGAGTACTACACCTTTTCTGACAGAAGCTGATTGTCATGGAGATATCAATTTAAATGTTCCTGTCTCAGAAAGTGTGGGGAAACGAAAGGTCACAGATCAGTCAGACACAGCACTATGTGACTCAACATTGCCTCCTGATGATTCTCAGAATTCTTGGAAAAAGCTGAAGAGAATCTCAGATGATGTAGTTACTGTAATTAATGATCATAGCAAGAACCTAAATTTGGGTGCATGTGATGAAAGTAAACACACAATTACTTGTGCACCTTTGGACAAATCTGTTGAACATGCTTCAAATAAATTAGTAGTTTCTTCTAGCACTTGCCATGGTGAGCAAGATAAAAGTGATGGGGATGGACCAAAAGATGTCACAAATGAGACAGAATTTAAGAAGTTTTCCAATTCAATGGAAGGGCAAGTTGATGGGATGTTAGGTCTCTCGGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGTGTAGAAATGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTTCTGGCTTGAAGACTTGCATGGAAATTGCTAGTTATATGCATGCTGGAGGAGTGTCACTGCCCCACAGATCTATTGTTGCACCGAGTTCAATCATAGACGACAAGGGGAAAATTGATGCAGAGTGTACAGACCAAGAGATGTCATCTAGGTCCCGGTTCTTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGAAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGCCAATGTGTGGAAAGGAATGTCCTTGTGTTAATGGAGGAACTTGCTGTGAAAAATATTGTGGTTGTTCAAAGAGCTGCAAAAACCGATTCAGAGGATGTCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGCCCATGCTTTGCTGCTGGACGTGAATGTGACCCAGATGTCTGCCGAAATTGCTGGGTTAGTTGCGGAGATGGTTCGTTAGGGGAGCCACCTCGGCGTGGAGAGGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGCAAAATCTGATGTTGCAGGATGGGGAGCCTTTTTGAAGAACCCAGTTAACAAAAATGACTACCTTGGAGAGTACACAGGTGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGATCGTGCAAACTCTTCTTTTCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTGAAATTTGCGAACCACTCATCAAACCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACAGAGTAGGCATATTCGCCAAGGAACATATTGATGCTAGTGAGGAGCTATTCTATGATTATCGTTATGGTCCAGATCAAGCACCCCCATGGGCTCGTAAGCCTGAGGGTTCTAAGAGAGACGAATCAGCAGTTTCTCAAGGCAGAGCAAAGAAACATCAATCACATTGA 2145 0.4289 MAFEEYGLNDEVLNIVSQFVGGTSLEIQERYKSIKEKNIGRLDQYSEGSGEYESPIGICPGKSLGAALDSFDNLFCRRCLQIFDCRLHGCSQPLTYPSEKQTVWSEPEGDRKPCSDQCYLQPQVIHKKRIGVGNGYNMQYSVVATPESTQNGRIKHGQLKVVKRLSEDSTPGSFQDKKTAIMEEEDGILATSGAAEPGNQSTTPFLTEADCHGDINLNVPVSESVGKRKVTDQSDTALCDSTLPPDDSQNSWKKLKRISDDVVTVINDHSKNLNLGACDESKHTITCAPLDKSVEHASNKLVVSSSTCHGEQDKSDGDGPKDVTNETEFKKFSNSMEGQVDGMLGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIASYMHAGGVSLPHRSIVAPSSIIDDKGKIDAECTDQEMSSRSRFLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQPMCGKECPCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESAVSQGRAKKHQSH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3823g00054 714 ProSiteProfiles CXC domain profile. 452 551 IPR026489 -
Gabi3823g00054 714 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 714 IPR025778 GO:0031519
Gabi3823g00054 714 Pfam SET domain 576 679 IPR001214 GO:0005515
Gabi3823g00054 714 SMART CXC_2 500 537 IPR033467 -
Gabi3823g00054 714 Gene3D SET domain 466 682 IPR046341 -
Gabi3823g00054 714 SUPERFAMILY SET domain 466 683 IPR046341 -
Gabi3823g00054 714 CDD SET_EZH 565 681 - -
Gabi3823g00054 714 SMART set_7 565 686 IPR001214 GO:0005515
Gabi3823g00054 714 MobiDBLite consensus disorder prediction 691 707 - -
Gabi3823g00054 714 FunFam Putative histone-lysine N-methyltransferase EZH2 466 682 - -
Gabi3823g00054 714 MobiDBLite consensus disorder prediction 226 246 - -
Gabi3823g00054 714 Pfam CXC domain 504 535 IPR041355 -
Gabi3823g00054 714 MobiDBLite consensus disorder prediction 304 324 - -
Gabi3823g00054 714 ProSiteProfiles SET domain profile. 565 680 IPR001214 GO:0005515
Gabi3823g00054 714 MobiDBLite consensus disorder prediction 685 714 - -
Gabi3823g00054 714 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 713 IPR045318 GO:0006338|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3823g00054 Gabi-Chr3823 462224 474066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3823g00054 554 683 C2H2 Transcription Factor Family AT2G23740 26.531 4.01e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3823g00054 SET 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3823g00054 - - gmx:100808730 1203.73