Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3823g00047 ATGGTGTCCAAACCTACCGACTCTGCTCCCAAACTTCGAAAACAATATGGGGAGTCAGCAAATGATGCTGTTGGAACCTTGTCCATCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATCAATTAAAGAAAAACTTCAGAGGAATGAGAAGAAGCTACAATGTCATATTTCAGGGGTCATGTCAGCAATATCAGTAGGAGACTCTTCAAAGACGGAGGAAAATAGGAAAACTCCAATGCTTTCTTCAAGAATTGACCATCCTTTATGCATATTCAGTGGTTTCTCTCAAGTTTCAGGAGACAAAGACCACAGCAATCAAGACGTTTTATCTGCTACAAGTGTCAAGATTCCATGTATTGAAAGATTGCCACCATATACATCTTGGATATTTTTGGACAGAAATCAGAGGATGGCCGAAGACCAGTCAGTTGTTGGAAGAAGACGTATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTCAACAGAACCTGAAGAAGAAAAACATGAATTTTCTGAGGCTGAGGACCGTGTTCTATGGATGGCATTTGAGGAATATGGGTTAAATGACGAGGTACTGAATATTGTTAGCCAGTTTGTTGGGGGCACCAGTCTAGAAATTCAGGAGAGATACAAAAGTATCAAGGAAAAGAATATTGGTAGGTTGGACCAGTATTCAGAAGGCTCAGGAGAATATGAATCTCCAATTGGCATATGTCCAGGGAAAAGCCTGGGTGCTGCATTAGATTCTTTTGATAACCTTTTCTGTCGCCGGTGCCTGCAGATTTTTGACTGTCGCCTGCATGGCTGTTCTCAACCTTTAACATATCCTAGTGAAAAGCAGACAGTTTGGTCTGAGCCTGAAGGTGACAGGAAACCATGCAGTGATCAGTGTTACCTTCAGCCGCAAGTCATACACAAAAAAAGGATAGGAGTTGGGAACGGATACAACATGCAGTACTCAGTCGTAGCCACACCAGAGAGCACACAAAATGGAAGAATAAAGCATGGGGATAAGAAAACTGCAATTATGGAAGAGGAAGATGGGATATTGGCAACCTCTGGTGCAGCAGAACCTGGTAATCAGAGTACTACACCTTTTCTGACAGAAGCTGATTGTCATGGAGATATCAATTTAAATGTTCCTGTCTCAGAAAGTGTGGGGAAACGAAAGGTCACAGATCAGTCAGACACAGCACTATGTGACTCAACATTGCCTCCTGATGATTCTCAGAATTCTTGGAAAAAGCTGAAGAGAATCTCAGATGATGTAGTTACTGTAATTAATGATCATAGCAAGAACCTAAATTTGGGTGCATGTGATGAAAGTAAACACACAATTACTTGTGCACCTTTGGACAAATCTGTTGAACATGCTTCAAATAAATTAGTAGTTTCTTCTAGCACTTGCCATGGTGAGCAAGATAAAAGTGATGGGGATGGACCAAAAGATGTCACAAATGAGACAGAATTTAAGAAGTTTTCCAATTCAATGGAAGGGCAAGTTGATGGGATGTTAGGTCTCTCGGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGTGTAGAAATGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTTCTGGCTTGAAGACTTGCATGGAAATTGCTAGTTATATGCATGCTGGAGGAGTGTCACTGCCCCACAGATCTATTGTTGCACCGAGTTCAATCATAGACGACAAGGGGAAAATTGATGCAGAGTGTACAGACCAAGAGATGTCATCTAGGTCCCGGTTCTTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGAAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGCCAATGTGTGGAAAGGAATGTCCTTGTGTTAATGGAGGAACTTGCTGTGAAAAATATTGTGGTTGTTCAAAGAGCTGCAAAAACCGATTCAGAGGATGTCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGCCCATGCTTTGCTGCTGGACGTGAATGTGACCCAGATGTCTGCCGAAATTGCTGGGTTAGTTGCGGAGATGGTTCGTTAGGGGAGCCACCTCGGCGTGGAGAGGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGCAAAATCTGATGTTGCAGGATGGGGAGCCTTTTTGAAGAACCCAGTTAACAAAAATGACTACCTTGGAGAGTACACAGGTGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGATCGTGCAAACTCTTCTTTTCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTGAAATTTGCGAACCACTCATCAAACCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACAGAGTAGGCATATTCGCCAAGGAACATATTGATGCTAGTGAGGAGCTATTCTATGATTATCGTTATGGTCCAGATCAAGCACCCCCATGGGCTCGTAAGCCTGAGGGTTCTAAGAGAGACGAATCAGCAGTTTCTCAAGGCAGAGCAAAGAAACATCAATCACATTGA 2667 0.4237 MVSKPTDSAPKLRKQYGESANDAVGTLSIKINQLKKQIQAERIVSIKEKLQRNEKKLQCHISGVMSAISVGDSSKTEENRKTPMLSSRIDHPLCIFSGFSQVSGDKDHSNQDVLSATSVKIPCIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEESTEPEEEKHEFSEAEDRVLWMAFEEYGLNDEVLNIVSQFVGGTSLEIQERYKSIKEKNIGRLDQYSEGSGEYESPIGICPGKSLGAALDSFDNLFCRRCLQIFDCRLHGCSQPLTYPSEKQTVWSEPEGDRKPCSDQCYLQPQVIHKKRIGVGNGYNMQYSVVATPESTQNGRIKHGDKKTAIMEEEDGILATSGAAEPGNQSTTPFLTEADCHGDINLNVPVSESVGKRKVTDQSDTALCDSTLPPDDSQNSWKKLKRISDDVVTVINDHSKNLNLGACDESKHTITCAPLDKSVEHASNKLVVSSSTCHGEQDKSDGDGPKDVTNETEFKKFSNSMEGQVDGMLGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIASYMHAGGVSLPHRSIVAPSSIIDDKGKIDAECTDQEMSSRSRFLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQPMCGKECPCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESAVSQGRAKKHQSH 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3823g00047 888 Pfam CXC domain 678 709 IPR041355 -
Gabi3823g00047 888 Gene3D SET domain 640 856 IPR046341 -
Gabi3823g00047 888 SMART sant 179 229 IPR001005 -
Gabi3823g00047 888 SMART sant 519 569 IPR001005 -
Gabi3823g00047 888 SMART CXC_2 674 711 IPR033467 -
Gabi3823g00047 888 MobiDBLite consensus disorder prediction 859 888 - -
Gabi3823g00047 888 ProSiteProfiles SET domain profile. 739 854 IPR001214 GO:0005515
Gabi3823g00047 888 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 21 887 IPR045318 GO:0006338|GO:0042054
Gabi3823g00047 888 FunFam Putative histone-lysine N-methyltransferase EZH2 640 856 - -
Gabi3823g00047 888 SUPERFAMILY SET domain 640 857 IPR046341 -
Gabi3823g00047 888 MobiDBLite consensus disorder prediction 478 498 - -
Gabi3823g00047 888 CDD SET_EZH 739 855 - -
Gabi3823g00047 888 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 888 IPR025778 GO:0031519
Gabi3823g00047 888 MobiDBLite consensus disorder prediction 865 881 - -
Gabi3823g00047 888 MobiDBLite consensus disorder prediction 165 185 - -
Gabi3823g00047 888 ProSiteProfiles CXC domain profile. 626 725 IPR026489 -
Gabi3823g00047 888 SMART set_7 739 860 IPR001214 GO:0005515
Gabi3823g00047 888 Pfam SET domain 750 853 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3823g00047 Gabi-Chr3823 462224 475870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3823g00047 728 857 C2H2 Transcription Factor Family AT2G23740 26.531 4.27e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3823g00047 SET 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3823g00047 - - gmx:100808730 1491.09