Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3823g00033 ATGACTGAACAGTTTCATCACATTCACAAGACAATGAATCTCTGCTTATCAATTGCCTTGCGACCTTCATCTTTCGTGTTCCTGCTGGCATATGGTGCCCTGATAGTTCTGGTCTCATTGATGCCATGCTGGTATGGCATAGTCACACACATGGAGAAACGTGTGAGTTTGAACTCAGAAAATATCGTGTCCCAATTTCCATCAGAAATTGAGTACTCTGCTGAACTCTTACACCCTATGAAATCATCATCTACCAATTTAGCAAGATTTCTGAGTTCATCCATTGATACAACGAATATCTCTTTCTCTGATATTGAGACCAAGGTGGCTCCGTTTTTATTTGAAGCATTTAAGACAGTTCCTCACTTAGCCCAAATCTCATACATAGGGATGGAAGGTCTCTTTTTCTCATACTACATTGATCATGATAAGGCACTAGCAATGTACTCTAATTCATCATCATCTTCGTCTTTAAATTCTGGTGCCTCAAATAAAACCTTATACTATATCCAGCCTGTAAATCATGAAACTGGAGAGGTTTTTGGGGAAGCAATAATATCTAACCCCTCTATCAGTGCAAGTTGGATTAGGGAAGCTGTTAATATTTCACATGGTTTTACTTCATTGGGAACCAAGTGGAGCAATGGTCATGATCTTTTGTTCCTCAGTTCAGCTAGCATCACAAGAACAGGAGTCATCTCTCTAGGGTTTTCGGCAACAGCAATAACTGATTTTGTTACTCGTATAATTAGCCATCAAGGCACAACCTCGTATTTGGCTACCAAAGATGGAAAAGTTCTTCATGTAGAAGGGTTTCAACATACCCATTTGGTGATTTCTAATGATGCGGTTTCCTTCCAATCAGTGAACGTAAATGGTGATTTAACGGGTAATGAGGGCAATGTCTCGTGCAAGGATAAAGCCGTTGCTTCTAATTTGAATATTCGGGATTCTGAATATTTAATTCATTGCTACCCCATTGATATAATGGGAATAGAATCGGTGTATGTTTTGGCTGTGCCACAAAACGGAGTTGTCAGCTTTGATGTGAATTATAACAGGAAGGGATTGACACTGTTGATTGTATCGATGGTGATGATATTTATTGCTATCTTGAGTTTTCTATACATAAATGGTAGAGCCACAGGGAGAGAAATGCATTTGATTGCCTCACTCATCAAACAGATGGAAGCCACACAAGAAGCTGAGAAAAAGAATATGAATAAGAGCGAGGCTTTTGCTAAAGCCAGCCATGATGTTCGGTCTTTTCTCGCAGGTCTTATGGGTTTGATAGAAGTGTCCAAGGAGTTAGTTGTCGCCGGTTCAGAATTGAAGACCAATTTAAATCAAATGGATACTTGTACCCAAGACTTACTAGGATTGTTGAATTCTATACTTGACACAAGCAAAATTGAGGCAGGGAAATTACAACTTGAGGAAGAGGAATTTGATGTATTCCGTCTTGTGGAAGAAGCAGTTAATTTATACCATCCCGTGGCTATGAAGAAAGGTGTTGATCTTGTGCTGGACCCCTGTAATGGTTCTGTTATCAAATATGCACGTGTGAAAGGTGACAGGGGAAAACTTAAACAAATTTTGTGCAATTTACTGAGCAATGCTGTTAAATTTACTGATGAGGGGCACATAGCAGTTCGGGCATGGGCTCAGAAGCCAAGTTTGCAGAACTCAATAATCACTACTAATCAATATAGTTTCACCAAACATTTTTCATGCTTATTTTATAAGAAAAACGAAGCTCATGTTGATATAGAAGCCATGAATTCAATCCAACAAGATCCGTGTTCTATGGATTTTGTGTTTGAAGTGGATGACACAGGAGTAGGAATTCCTAAGGAGAAGCACAAATCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGGACCTGGCCAAGGAGGAACTGGCTTGGGACTTGGGATTGTTCAGTCTTTGGTGCGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGATAAAGGTGAAAAAGGAACATGCTTCAGGTTCAATGTGCACCTAACTGTATGTGAGACAGAGATTGATGATAGCACAAGGGAATTAGGTGATGGAAATCAAGCTGAAGGAAGAACCATTCACGCTACTAGTACTAGTCCTAGGCCTGAGGATTCTTGTGTTGTTCTTTTGATTGCAAGCGAGGAGCGCCGAAAAACTTCACAAAGGTTCATGGAGAGATTAGGGATTAAAGTTAATGTTGTGAAGGAATGGAAGCATCTGTTCTACACTCTCATCAAGATCAAACAGAAGGGTAACCTTTCCAGTGGCAAAAGTACTCCTGGGTCTACAAGTTCTCATAATTCTCTTGCCAGAGCCAAAGGAGTAGTTCCTTTGAGTGGTATGGATGGAACTGAGTATATGCCTTCAGTCTTCAAGAAGACACATAATGGAGCTTCCCCAGGTTTCATCCTGATTGTAATTGATGCAAATGCAGGACCATTTTCTGAACTTGATAAGATTGTGTCCCAGTTCAAAAGAGACCTTTGCAACCCCTTTAAGGTTGTTTGGTTGGGTAAGCCACTTATACGTAGAATAATTGATCAAAATGACATTGTCATATCCCAACCTTTTCATGGTAGTCGTTTGTGCCAAGTTATAGAGCTTCTTCCTGAGTATGGTGGTGCTTGGCAAAGTAATTCTAGTAAAGCAAAGAGAGAAAGTACTCATGATCATAGAGCTGGACTGGATTTCCCTCCACTGGAGAGATCACGAGTATCCCCATATAATGATAGCTCATTCCAAAGTGTTGAACAAACTTGGAAGGGAACTCAACAATCAAATGGAGATCCTTCACATGTTTGGCCCAAAGCTGCAAGAAAATATCCAGTTCATCAGGGGGAAACACAAGAATGTGGAAAACTCTTGAGTGGTAAGAAACTTTTGATTGTTGAGGACTCTGCATTGTTACGAAAGCTAGCTTCGGCTACTTTGATTCCCCTTGGTGCAACTATCGAGCAATGCGAGAATGGTGAACAAGCTGTGCGGCTAGTTGATGAGGGTCTAGCTCGGGATTTTCCTAATCCTCCTTATGATTACATCTTAATGGACTGCCTGATGCCAGTAATGGGTGGGCTTGAGGCAACAAGGCTGATACGAAATAAGGAGAAGCCCTATGGTGTTCGCATTCCTATCATTGCATTAACTGCTCTCACTGATAAAATGAAGAAAGAGGATGGAATGGACTTTCATATAGTCAAACCCATTAAGAGAGAGCATTTACTTGAAGCCATCAGATACATACATGGTCAAGAGTAG 3288 0.4045 MTEQFHHIHKTMNLCLSIALRPSSFVFLLAYGALIVLVSLMPCWYGIVTHMEKRVSLNSENIVSQFPSEIEYSAELLHPMKSSSTNLARFLSSSIDTTNISFSDIETKVAPFLFEAFKTVPHLAQISYIGMEGLFFSYYIDHDKALAMYSNSSSSSSLNSGASNKTLYYIQPVNHETGEVFGEAIISNPSISASWIREAVNISHGFTSLGTKWSNGHDLLFLSSASITRTGVISLGFSATAITDFVTRIISHQGTTSYLATKDGKVLHVEGFQHTHLVISNDAVSFQSVNVNGDLTGNEGNVSCKDKAVASNLNIRDSEYLIHCYPIDIMGIESVYVLAVPQNGVVSFDVNYNRKGLTLLIVSMVMIFIAILSFLYINGRATGREMHLIASLIKQMEATQEAEKKNMNKSEAFAKASHDVRSFLAGLMGLIEVSKELVVAGSELKTNLNQMDTCTQDLLGLLNSILDTSKIEAGKLQLEEEEFDVFRLVEEAVNLYHPVAMKKGVDLVLDPCNGSVIKYARVKGDRGKLKQILCNLLSNAVKFTDEGHIAVRAWAQKPSLQNSIITTNQYSFTKHFSCLFYKKNEAHVDIEAMNSIQQDPCSMDFVFEVDDTGVGIPKEKHKSVFENYVQVKETGPGQGGTGLGLGIVQSLVRLMHGDIGIVDKDKGEKGTCFRFNVHLTVCETEIDDSTRELGDGNQAEGRTIHATSTSPRPEDSCVVLLIASEERRKTSQRFMERLGIKVNVVKEWKHLFYTLIKIKQKGNLSSGKSTPGSTSSHNSLARAKGVVPLSGMDGTEYMPSVFKKTHNGASPGFILIVIDANAGPFSELDKIVSQFKRDLCNPFKVVWLGKPLIRRIIDQNDIVISQPFHGSRLCQVIELLPEYGGAWQSNSSKAKRESTHDHRAGLDFPPLERSRVSPYNDSSFQSVEQTWKGTQQSNGDPSHVWPKAARKYPVHQGETQECGKLLSGKKLLIVEDSALLRKLASATLIPLGATIEQCENGEQAVRLVDEGLARDFPNPPYDYILMDCLMPVMGGLEATRLIRNKEKPYGVRIPIIALTALTDKMKKEDGMDFHIVKPIKREHLLEAIRYIHGQE 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3823g00033 1095 MobiDBLite consensus disorder prediction 690 712 - -
Gabi3823g00033 1095 PANTHER TWO-COMPONENT HISTIDINE KINASE 85 1089 - -
Gabi3823g00033 1095 SMART HisKA_10 408 474 IPR003661 GO:0000155|GO:0007165
Gabi3823g00033 1095 SUPERFAMILY CheY-like 967 1091 IPR011006 -
Gabi3823g00033 1095 Gene3D - 395 474 - -
Gabi3823g00033 1095 CDD REC_hyHK_CKI1_RcsC-like 971 1088 - -
Gabi3823g00033 1095 Gene3D - 475 686 IPR036890 -
Gabi3823g00033 1095 Gene3D - 951 1092 - -
Gabi3823g00033 1095 MobiDBLite consensus disorder prediction 890 911 - -
Gabi3823g00033 1095 Pfam His Kinase A (phospho-acceptor) domain 409 474 IPR003661 GO:0000155|GO:0007165
Gabi3823g00033 1095 ProSiteProfiles Response regulatory domain profile. 970 1092 IPR001789 GO:0000160
Gabi3823g00033 1095 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Gabi3823g00033 1095 PRINTS Bacterial sensor protein C-terminal signature 623 633 IPR004358 GO:0016310|GO:0016772
Gabi3823g00033 1095 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Gabi3823g00033 1095 Pfam Response regulator receiver domain 972 1089 IPR001789 GO:0000160
Gabi3823g00033 1095 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 463 677 IPR036890 -
Gabi3823g00033 1095 SMART REC_2 969 1088 IPR001789 GO:0000160
Gabi3823g00033 1095 SMART HKATPase_4 524 681 IPR003594 -
Gabi3823g00033 1095 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 396 475 IPR036097 GO:0000155|GO:0007165
Gabi3823g00033 1095 MobiDBLite consensus disorder prediction 894 909 - -
Gabi3823g00033 1095 ProSiteProfiles Histidine kinase domain profile. 415 681 IPR005467 -
Gabi3823g00033 1095 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 524 680 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3823g00033 Gabi-Chr3823 373368 378199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3823g00033 18 1060 Histidine Kinase Gene Family AT2G47430 39.783 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3823g00033 HATPase_c 1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3823g00033 - - cam:101504256 1309.28