Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3823g00025 ATGTTGGAAACGAGATATCCGTCGCGAGTCTTTTGCGGTGTTAATTTCGTTCTCTTTGGTTTTGATTCCGTTACTGAAAGCAAGATCCGATTCAAACTTGTGAATGGCGGTGGAGTTGATGTGGGCCAGTACAGTGGAAGTTGCACGCATGTCATTGTTGATAAGATTGAATATGACGATCCTGTGTGTGTTGCTGCGAGAGATGATCGGAAGACGCTCGTCACTGCGTTGTGGGTTGAACATAGTGCTGATATTGGAATGCCCGTTGATGCTGCCTCGGTTATGTACAGACCTCTTAAAAATTTAAATGGAATACCGGGTGCGAAAACTTTGATTTTGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCTAAGCCATTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTCGAAGGGGAGAAGTACGAGCTTGCCAAGAGGTTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGAATTGGCTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGACGATGGAGGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCCAAGATGGGGCAATCAGGGGGGAGAAATAGAAACAAAAGTCCCCTTAGTTCAAAATCTGGTATAGCTATGACTCATGGATTATCAAAATCAGCAAGAGAGGCATCAAACGCCTTCCCAGATTCTACTGGTCCACAGGTTTTGCCAAAAGTTGATAAGGGTAAAGACCCTTTAATTATTTCAGGAAACCAGAACAGATCTGATCAAGACTTGAGCTTTCATTGTGTTGATGACCAAAAGATAAGCAGTCCGGCTCCTGTTGTTTCTTGGCATTCTACATCATGTCAACTACCTGACACATTTGTTAAGGCCAGTGAGTCTAATAATGCTGATTTTCCAAAGGCACTTGGCTGCCAGGATCTTGGCATTACAATAAATACAAATTCATCTGATCAGCAACCTGATCTGCATGATGACGCTTTTGGCTCTAAGAAGTTGGTAAGTGACTTGAGATCAACTTCTGCAAGTGCTGAAGGATGTGAACATTTAGATGTAAAGCTTCGTGCTATGAGTTATGCTAGGAAGAACCAAAGGGGATTTACTCTTCCAAGGACTTTAGATGAATTCTCAGGCAGAGAAGTCAACAACCTTGAAACCTCTTCCAGTAAGGTGGAAAAGGCAAGTGAGGGAATCAAATCTACCTGTCTTGAAGGTTCTGGGAAACGAAGTGATTTTGTTGAAGGGAATGAGCCAATTAGTTTATTGCCTCAAAAGAGGACAAATGAAGCTGCTCCTGCTTCTACTAAATTAAAATCAAGAAAGATGACTGCTGACGCAAAATTATCCATTGAAAGAATGCCATTAGCAAATGGAAAATCTCAAGGGTTAAAAGTGAAATCTTTGGTGGACGAGGCACCTGTGGCTGACGGCTGTTTTTCTGTTAGCAAAGATGGTATAAATAACTCAAGCATTTGCTTGATTTCTAAATCTGCAGCTTGTACCTCTCACTCAATGGCATTTGATGAGCCTTCCTCAAGAAATGTAAGCTCTGAGTCTGCTCAATGTGATAATACCTATCAGAATTCAGCACAAATGGCTGTTCAGAGCTTGAGTGAGTGTAAAAGTAATGGCAAGCCTGATATCACAGGTTTTGGAATGGGACAAGTTGATGATAATAAAGCTGAGCAACATAACGTCACTAAATATGTGGAGTGTTCACCTCCAGGAAATCAGAAGTCACGGAATGAGGAATCCGCTGGTCTTACTAGTTTGGATTTAAGCAATGAAGAAAATAATAAGCTGATTAGAAAACCACCTCGCAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAGACCTAAATTTGGTGGCACTGCTAAACAGAAAAGTTCAGTTTCCTTGAATAAAACTACCCCGCAAGGTGAAGGTGTATGTTTGCCCAGTGAAAGTAAAGAGATAGCAACTTGTGATGCCAATAAGCTTCAAGTGTCCCCTCAAAGCCTTGATGTTAATAAATCAATGGAACAAGAAACCATTATTAAATATGCAGAAGATGCTGGTCGCAGAACTGAATTTTTGGATGACGAAACAGAGGCTCCAGATGACAAAAGTGAATATGGGTTAGGAATGGACCTTGATGAAGAACTGTTTCATCTTTCAAAAAAAGCGGTCACAGCAACTGAAGAGAAGTCAGGAGCAAATCACCATAAAACAAAATGTGAAGAAGCAATGCTTCCGAAGAAAGGTACAAATGAAACTGAAAAACAGAAGCCACCTTCACTGGTAGACTCAACCTCGAAGTTAAAAGTAAAGCATCAAGCGAGAAAACGTCCTGCAGGTAGAACCAAGAAGACTACAGTTGCGAATAAATTATCGAAATCTGAAGAGGTGGTATCAGAGAAGGTTCATAATGAGACGAGACATCTGGCAGAGAAAGAAACCCTGGAAGAAATGTCCCTTCCTTCTCATATAAGTGATAACTCAACTGTACCAAGAAGTAAGTCAGGGAATTTTGTAGAAGAGGAGAAGGAGAATAGACCAATTGATGGAGAGCAGGATGTAGTGGAGGGAAGAAGTGTTGGAAATCCAACTATTAAATCTAGTGTAAAGCCAGCAAAGATCAACTCTAGGAGAATGGGGCTCAATCCATCAATATCAGAATCTAATGCAAGAGTGAAAACTGAAGCCGCGTGTTTTATATTAAAAGGGCATTGCCTACAGAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCGACACATTTCATAGCCCCAGACCCTATACGCAGGACTGAAAAATTTTTCGCTGCTGCTGCATCCGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAGTTCTTGTTAGAGGAGCCTTATGAGTGGCACCAGAATGGTCTCAGTGAGGATGGTGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTGTTGAAAGAAAGATCAGGTCATGGTGCCTTCTATGGAATGCGAATTGTTGTATATGGCGATTGCATTACCCCGTCTTTGGATACTCTGAAGCGTGTGGTCAAAGCTGGAGATGGAACGATATTAGCAACTTCTCCTCCTTATAATCGCTTCCTTGGTACGGGGATCGACTATGCCATAGTTAGCCCTGGCATGCCACGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTCGAGTATGTCTGCAAGCCCGGGTTCTCCCTTGAGAAGCATGTATTGTATGGCACTCATGCTTGGGCAGAGAAGTCATACGCTAAACTTCAAAGTATGGCAGAAGAGATTATTGAGGAGCTCATTCCTCCTGAGGATTGCAGTGATGATGATATAATTTGCCAAGTATGTGGATCCCGGGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCCTTGGCTGTGGAATTGGTACCCATATCGATTGCTGCGATCCTCCACTCACAGATGTTCCTGAGGAGGATTGGTTTTGCCCAAAATGCAGTACAACCCGAAAATGCTCAAACAATCCCATGAAAAGGAAAAAGTGTCCCTTGTCTTTATCTAAGATTAAATGATTTTCCCTCCCCCTTTTTGAGTTGTCACCGTATAGGAAACTTACTTGA 3783 0.4224 MLETRYPSRVFCGVNFVLFGFDSVTESKIRFKLVNGGGVDVGQYSGSCTHVIVDKIEYDDPVCVAARDDRKTLVTALWVEHSADIGMPVDAASVMYRPLKNLNGIPGAKTLILCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLGTIKLVNHRWLEDCLKNWLLLPEDKYNKSGFELETMEEEAKDSEEEAEDSKMGQSGGRNRNKSPLSSKSGIAMTHGLSKSAREASNAFPDSTGPQVLPKVDKGKDPLIISGNQNRSDQDLSFHCVDDQKISSPAPVVSWHSTSCQLPDTFVKASESNNADFPKALGCQDLGITINTNSSDQQPDLHDDAFGSKKLVSDLRSTSASAEGCEHLDVKLRAMSYARKNQRGFTLPRTLDEFSGREVNNLETSSSKVEKASEGIKSTCLEGSGKRSDFVEGNEPISLLPQKRTNEAAPASTKLKSRKMTADAKLSIERMPLANGKSQGLKVKSLVDEAPVADGCFSVSKDGINNSSICLISKSAACTSHSMAFDEPSSRNVSSESAQCDNTYQNSAQMAVQSLSECKSNGKPDITGFGMGQVDDNKAEQHNVTKYVECSPPGNQKSRNEESAGLTSLDLSNEENNKLIRKPPRKKSVAKRSLGSRPKFGGTAKQKSSVSLNKTTPQGEGVCLPSESKEIATCDANKLQVSPQSLDVNKSMEQETIIKYAEDAGRRTEFLDDETEAPDDKSEYGLGMDLDEELFHLSKKAVTATEEKSGANHHKTKCEEAMLPKKGTNETEKQKPPSLVDSTSKLKVKHQARKRPAGRTKKTTVANKLSKSEEVVSEKVHNETRHLAEKETLEEMSLPSHISDNSTVPRSKSGNFVEEEKENRPIDGEQDVVEGRSVGNPTIKSSVKPAKINSRRMGLNPSISESNARVKTEAACFILKGHCLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSQAGKFLLEEPYEWHQNGLSEDGAINMEAPRKWRLLKERSGHGAFYGMRIVVYGDCITPSLDTLKRVVKAGDGTILATSPPYNRFLGTGIDYAIVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLEKHVLYGTHAWAEKSYAKLQSMAEEIIEELIPPEDCSDDDIICQVCGSRDRGDVMLICGDESGSLGCGIGTHIDCCDPPLTDVPEEDWFCPKCSTTRKCSNNPMKRKKCPLSLSKIKXFSLPLFELSPYRKLT 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3823g00025 1260 SMART BRCT_7 8 86 IPR001357 -
Gabi3823g00025 1260 SMART BRCT_7 106 183 IPR001357 -
Gabi3823g00025 1260 SMART BRCT_7 917 998 IPR001357 -
Gabi3823g00025 1260 SMART BRCT_7 1036 1123 IPR001357 -
Gabi3823g00025 1260 SUPERFAMILY BRCT domain 110 192 IPR036420 -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 571 673 - -
Gabi3823g00025 1260 Pfam PHD-finger 1169 1221 IPR019787 -
Gabi3823g00025 1260 ProSiteProfiles Zinc finger PHD-type profile. 1167 1223 IPR019787 -
Gabi3823g00025 1260 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 755 816 - -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 221 257 - -
Gabi3823g00025 1260 Coils Coil 191 218 - -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 755 781 - -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 597 623 - -
Gabi3823g00025 1260 Gene3D BRCT domain 99 225 IPR036420 -
Gabi3823g00025 1260 Gene3D BRCT domain 2 95 IPR036420 -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 651 671 - -
Gabi3823g00025 1260 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 795 1235 IPR044254 -
Gabi3823g00025 1260 ProSiteProfiles BRCT domain profile. 934 1008 IPR001357 -
Gabi3823g00025 1260 MobiDBLite consensus disorder prediction 197 279 - -
Gabi3823g00025 1260 CDD BRCT_TopBP1_rpt7 934 998 - -
Gabi3823g00025 1260 Pfam twin BRCT domain 111 175 IPR001357 -
Gabi3823g00025 1260 Gene3D BRCT domain 1036 1137 IPR036420 -
Gabi3823g00025 1260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1164 1225 IPR013083 -
Gabi3823g00025 1260 SUPERFAMILY FYVE/PHD zinc finger 1159 1227 IPR011011 -
Gabi3823g00025 1260 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Gabi3823g00025 1260 SUPERFAMILY BRCT domain 933 1011 IPR036420 -
Gabi3823g00025 1260 SMART PHD_3 1169 1221 IPR001965 -
Gabi3823g00025 1260 Pfam BRCA1 C Terminus (BRCT) domain 933 993 IPR001357 -
Gabi3823g00025 1260 Gene3D BRCT domain 922 1034 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3823g00025 Gabi-Chr3823 258090 264553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3823g00025 129 244 Core DNA Replication Machinery Family AT4G02110 64.655 5.48e-38 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3823g00025 BRCT 9.9e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3823g00025 K10728 - qsa:O6P43_007236 1170.22