Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3823g00019 ATGGGAAGGGCTCCTTGTTGTGACAAAGTGGGGTTGAGGAAGGGAAGGTGGACTGCAGAGGAGGATGAGATCTTAACAAAGTACATTCAGGCTAATGGGGAAGGTTCCTGGAGGTCATTGCCCAAGAATGCGGGATTATTAAGGTGTGGAAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGGGATGACATCAAACGAGGGAACATTTCTGCTAAAGAGGATTATACCATCGTAAAGCTACACGCTTCCTTTGGCAACAGGTGGTCCTTGATAGCAAGTCACTTGCCAGGAAGAACGGACAACGAGATAAAAAACTACTGGAATTCTCACCTTAGCAGGAAAATTTACAGTTTCGCGAGGACAGTTACTACAGACAACACCTTACAAGTGCAAGGAGTTATGGATACACCCAAAGTAGATATTCCGTTTCCACCTAAGGCTAAGAGGAAAGGTGGCAGAACTAGTCGTCGGGCCATGAAGAAGAACAACAGCTACACCCAAAGGCCTAAACAAAGTTTCACTCAACAGAAAAGTGAAGCTGCAGTTCTATTGCCACCCACACCGTCCCTAGAGAGTGAGGGTTTGTCTAGCGCCATCGTGGATTTCATGGTCTTGGAACCTCAAGTAGTTGACGAGAAAGTAGAGCTCATTGATGAGCCAAGTTCCTATGAAGAAACTCATGAAGGGAATTTGATGGAATTTGACAAGTGTCTTGGCGTTGATGACGACATCTTAGGACTGTGTGAAGTCGAAGGCATTAATGACGGTGGTGGGGCGTTGAGTTTTAATGAAATGATGGGTGCAAGTGGGGTTTTGACCTTAAGTGAAGAGAGAGAAAGGGAAAGCAATGATGTGAGGGCGAGTGTTGGTGATGAAAACGAAAGACGGAATGCGAGTCATGACAAAATGGGAACGAGGGAGGACCCAAGCTCGAATGGGGAAAGTGGAGGAGTATGCTATTCTTGTAATTCTCCGAAAGGATTGGGTTTGGATGATAACTGGGATTGGGAGAGCTTAATAGAGTTTAGTGATATTCATTCTAATGAGTCCGAATCTTCTAATTGGGAACACAAAGAAAACCTGCTGACTTGGCTTTGGAAAGACGATGATTGGGAAAGCGATTGCAACAAATTGGGAGAGATAGATATGGTTGCTTGGTTTCTCTCTTGA 1173 0.4476 MGRAPCCDKVGLRKGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDDIKRGNISAKEDYTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFARTVTTDNTLQVQGVMDTPKVDIPFPPKAKRKGGRTSRRAMKKNNSYTQRPKQSFTQQKSEAAVLLPPTPSLESEGLSSAIVDFMVLEPQVVDEKVELIDEPSSYEETHEGNLMEFDKCLGVDDDILGLCEVEGINDGGGALSFNEMMGASGVLTLSEERERESNDVRASVGDENERRNASHDKMGTREDPSSNGESGGVCYSCNSPKGLGLDDNWDWESLIEFSDIHSNESESSNWEHKENLLTWLWKDDDWESDCNKLGEIDMVAWFLS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3823g00019 390 MobiDBLite consensus disorder prediction 275 309 - -
Gabi3823g00019 390 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3823g00019 390 MobiDBLite consensus disorder prediction 275 319 - -
Gabi3823g00019 390 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3823g00019 390 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3823g00019 390 CDD SANT 16 61 IPR001005 -
Gabi3823g00019 390 MobiDBLite consensus disorder prediction 140 178 - -
Gabi3823g00019 390 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
Gabi3823g00019 390 SMART sant 13 63 IPR001005 -
Gabi3823g00019 390 SMART sant 66 114 IPR001005 -
Gabi3823g00019 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3823g00019 390 FunFam Myb transcription factor 11 67 - -
Gabi3823g00019 390 CDD SANT 71 112 IPR001005 -
Gabi3823g00019 390 Gene3D - 14 66 - -
Gabi3823g00019 390 Gene3D - 71 116 - -
Gabi3823g00019 390 MobiDBLite consensus disorder prediction 159 178 - -
Gabi3823g00019 390 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3823g00019 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3823g00019 390 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3823g00019 Gabi-Chr3823 188065 193687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3823g00019 1 390 MYB Transcription Factor Family AT2G47460 41.463 1.21e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3823g00019 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3823g00019 K09422 - gmx:100814275 395.201