Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3823g00002 | ATGGCAAAAGGGAAAAAATCCCCCTCCGCCAGCCTCCACCCTCCCTACTTCGAAATGATAGCGGATGCTATTTCCACGTTGAAAGAGCGCACTGGTTCGAGCCATCAAGCAATAGCAAAGTTCATCGAAGACAAACACAAGAAAGTGCTGCCTCCAAACTTCAGGAAAATGCTCTCCCTCCAGTTGAAGAACTTCGTCAAATCGGAGAGGCTTTACAAGGTGAAGAACTCCTACAAGATCTCTTCAAAGGACCATGAAACCCAGAAGAGCAAAACCGCCTCCAAAGCCACCAAAAAGACCACTCCGCCGCCGAAGCAGAAGGGTGGCAAGAAGATCGCAGAGAAAACCAAGAAACTGAGTCAGGTGAAGACACCCGAGGCTCTCAAGAAAAAAACCTCCACCACCACCAACACCAACAAGGATGCAACTAAGAAGAAAACTGTGGCAACCTCAGGAGGGAAAAAAGTGAAGCGTCTGAGTCAGGTGAAGACCCCTGAAGCCGTGAAGAAGAAGCCCAACTTGACCCCTATGAAGCGCAAGAGTACTCCCAAACCCATTAATTCTTCGAGGCCCACCAAGAAAGCTAGGAAATGA | 594 | 0.4882 | MAKGKKSPSASLHPPYFEMIADAISTLKERTGSSHQAIAKFIEDKHKKVLPPNFRKMLSLQLKNFVKSERLYKVKNSYKISSKDHETQKSKTASKATKKTTPPPKQKGGKKIAEKTKKLSQVKTPEALKKKTSTTTNTNKDATKKKTVATSGGKKVKRLSQVKTPEAVKKKPNLTPMKRKSTPKPINSSRPTKKARK | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3823g00002 | 197 | CDD | H15 | 13 | 98 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3823g00002 | 197 | PANTHER | HISTONE H1 | 5 | 184 | - | - | |
| Gabi3823g00002 | 197 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
| Gabi3823g00002 | 197 | MobiDBLite | consensus disorder prediction | 76 | 93 | - | - | |
| Gabi3823g00002 | 197 | MobiDBLite | consensus disorder prediction | 108 | 125 | - | - | |
| Gabi3823g00002 | 197 | SMART | h15plus2 | 10 | 77 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3823g00002 | 197 | Pfam | linker histone H1 and H5 family | 13 | 76 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3823g00002 | 197 | SUPERFAMILY | "Winged helix" DNA-binding domain | 12 | 91 | IPR036390 | - | |
| Gabi3823g00002 | 197 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 12 | 82 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3823g00002 | 197 | MobiDBLite | consensus disorder prediction | 76 | 197 | - | - | |
| Gabi3823g00002 | 197 | Gene3D | - | 8 | 101 | IPR036388 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3823g00002 | Gabi-Chr3823 | 49825 | 50920 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3823g00002 | 14 | 80 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 40.299 | 2.21e-10 | 56.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3823g00002 | K11275 | - | qsa:O6P43_010827 | 190.274 |