Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00088 ATGGCAACCGGTCTCGACATGTCACTCGACTACATTATCAAGAGCTCCGCCGCCGCACCTCGCCGCCGAGAATATGGTCCCGGACCGGACCGCCGCTTCACTCTTCACAACCTGGCCAGAACGACGCCGTACGCAATCCCTCAGGGAAGGCAAGCTAACGTGGTTCCGGAAATGGTTTTGGATGGTGCTGCAGCTGAGAGTGGCACAAAACTCTATATATCTAACTTGGATTATGGGGTTTCCAACCAAGATATTAAGCTGCTGTTCTCGGAAGAGGGTGAGTTGAAAAGGTACTCCATTCATTATGACAAGAGTGGGAGATCAAAGGGAACAGCAGAAGTTGTCTTTACAAGGCGGTCTGATGCTTTAACAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAATCATTGCAAATTGAGCTTGTTGGAACAAGATTGGTTAGTTCTGCTGTCACGCCTCTTTGTCAAAATAGCTTACTGGGAAGACCAAATAATGTCCTAGGAAGCGAACGAGGAAGGGTTGGAGGAAGCAGGTTCCACATTGGCTTTGCTCGTGGCTACCTTCCAAGGGGCCATGGAAAAGAGAAGGATCATGTTCAAAAGGTATCTTTTAGAGACCTTGATCATGACTTGGAGAGGTATCATCGCCGTCCAAGATTCCTCGGAGAAGTGAAGGGCCATATTGGAAAGGTCTCTGTTAGAGATCTTGATGCTGATTTAGAGAGGTATCACTTAGAAGCTATGCAGATAAATGAAGAAAACGGAAAGTGA 777 0.4685 MATGLDMSLDYIIKSSAAAPRRREYGPGPDRRFTLHNLARTTPYAIPQGRQANVVPEMVLDGAAAESGTKLYISNLDYGVSNQDIKLLFSEEGELKRYSIHYDKSGRSKGTAEVVFTRRSDALTAIKKYNNMRLDGKSLQIELVGTRLVSSAVTPLCQNSLLGRPNNVLGSERGRVGGSRFHIGFARGYLPRGHGKEKDHVQKVSFRDLDHDLERYHRRPRFLGEVKGHIGKVSVRDLDADLERYHLEAMQINEENGK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00088 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
Gabi3820g00088 258 SMART rrm1_1 70 142 IPR000504 GO:0003723
Gabi3820g00088 258 CDD RRM_THOC4 69 143 - -
Gabi3820g00088 258 Gene3D - 59 203 IPR012677 -
Gabi3820g00088 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Gabi3820g00088 258 SUPERFAMILY RNA-binding domain, RBD 48 147 IPR035979 GO:0003676
Gabi3820g00088 258 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 251 - -
Gabi3820g00088 258 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00088 Gabi-Chr3820 632046 634427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00088 61 144 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.32e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00088 K12881 - gmx:100785926 332.413