Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00082 ATGGCCGGAAAAGGAGATGGTCCTGCAATCGGAATCGATCTCGGCACCACCTACTCCTGCGTTGGAGTGTGGCAGCACGACCGTGTTGAAATCATTGCCAACGACCAGGGCAACCGTACGACGCCGTCTTACGTCGCTTTCACCGATTCCGAGCGTTTGATCGGTGATGCTGCCAAGAACCAGGTCGCCATGAACCCTATTAACACCGTCTTTGATGCTAAGCGTTTGATTGGAAGGAGGATCTCTGATGCTTCCGTTCAGAGTGACATGAAGCTATGGCCGTTCAAGGTTATTCCCGGTCCTGCTGAAAAGCCCATGATTGTGGTCAATTACAAGGGTGAGGATAAGCAGTTTTCTGCTGAGGAGATTTCCTCTATGGTGCTAATGAAGATGCGTGAGATAGCTGAGGCTTATCTCGGTTCCACTGTGAAGAACGCCGTTGTTACTGTTCCTGCATACTTCAATGACTCGCAGCGTCAGGCAACAAAGGATGCTGGAGTCATTGCTGGTCTTAATGTCATGCGTATCATCAATGAACCTACAGCTGCTGCCATTGCCTATGGTCTCGACAAGAAAGCCACCAGTGTGGGAGAGAAGAACGTGTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTCTCTCTTCTCACTATTGAAGAAGGTATATTTGAAGTTAAGGCCACTGCTGGAGATACTCATCTTGGTGGTGAAGACTTCGATAACAGAATGGTTAACCATTTTGTTCAGGAGTTTAAGAGGAAGCACAAGAAGGACATTAGTGGGAACCCAAGGGCTCTTAGGAGGTTGAGGACTGCATGTGAAAGGGCGAAGAGGACTCTTTCATCTACTGCACAGACTACCATTGAGATTGATTCTTTGTATGAAGGTGTTGATTTCTACACCACAATCACTCGTGCGAGGTTTGAGGAGCTCAACATGGATCTCTTCAGGAAGTGCATGGAGCCCGTTGAGAAGTGTTTGAGGGATGCTAAGATGGACAAGAGCACTGTCCATGATGTTGTACTTGTTGGTGGATCTACCAGAATTCCAAAAGTGCAGCAGCTGTTGCAGGATTTCTTCAACGGTAAGGAACTTTGCAAGAGCATAAACCCTGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCTATTTTGAGCGGTGAGGGTAACGAGAAGGTTCAGGATCTTTTGCTGTTGGATGTTACCCCCCTTTCTCTTGGTTTGGAGACTGCTGGTGGGGTTATGACTGTCCTCATTCCAAGAAACACTACCATTCCGACGAAGAAGGAGCAGGTTTTCTCAACTTACTCGGACAACCAGCCTGGTGTCTTGATCCAGGTATACGAGGGCGAGAGAGCCAGAACCAGGGACAACAACTTGTTGGGAAAGTTTGAGCTTTCTGGCATTCCTCCAGCACCTAGGGGTGTTCCGCAGATCACGGTTTGCTTTGAGAAGGTCGATGCGAAGAATGCCTTGGAAAACTATGCTTATAACATGAGGAACACTATTAAAGATGAGAAGATTGGCTCCAAGCTTTCTCCTGAGGACAAGAAGAAGATTGAAGATGCCATTGAGAATGCAATTCAATGGTTGGATGGTAATCAGCTGGCTGAGGCAGATGAGTTCGAAGATAGGATGAAGGAGCTGGAAAGCCTTTGCAACCCAATCATTGCGAAGATGTACCAGGGTGGAGGTGCTCCTGACATGGCTGGCGGTATGGATGATGAAGTACCACCATCTGGATCCAGTGGTGCTGGCCCCAAGATTGAAGAAGTTGATTAA 1785 0.4773 MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRISDASVQSDMKLWPFKVIPGPAEKPMIVVNYKGEDKQFSAEEISSMVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFEKVDAKNALENYAYNMRNTIKDEKIGSKLSPEDKKKIEDAIENAIQWLDGNQLAEADEFEDRMKELESLCNPIIAKMYQGGGAPDMAGGMDDEVPPSGSSGAGPKIEEVD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00082 594 FunFam Heat shock 70 kDa 235 318 - -
Gabi3820g00082 594 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Gabi3820g00082 594 FunFam Heat shock 70 kDa protein 390 544 - -
Gabi3820g00082 594 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gabi3820g00082 594 MobiDBLite consensus disorder prediction 565 594 - -
Gabi3820g00082 594 Gene3D Actin; Chain A, domain 4 235 318 - -
Gabi3820g00082 594 PANTHER HEAT SHOCK PROTEIN 70KDA 9 485 IPR013126 GO:0005524|GO:0140662
Gabi3820g00082 594 FunFam Heat shock protein 70 10 196 - -
Gabi3820g00082 594 Gene3D - 71 126 - -
Gabi3820g00082 594 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Gabi3820g00082 594 FunFam heat shock 70 kDa protein-like 71 126 - -
Gabi3820g00082 594 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 533 IPR029047 -
Gabi3820g00082 594 Gene3D - 192 366 - -
Gabi3820g00082 594 Pfam Hsp70 protein 9 485 IPR013126 GO:0005524|GO:0140662
Gabi3820g00082 594 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 384 563 IPR029047 -
Gabi3820g00082 594 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gabi3820g00082 594 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 58 66 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 209 219 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 369 389 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 36 48 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 337 353 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 396 415 - -
Gabi3820g00082 594 PRINTS 70kDa heat shock protein signature 146 166 - -
Gabi3820g00082 594 FunFam Heat shock 70 kDa protein 197 259 - -
Gabi3820g00082 594 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Gabi3820g00082 594 Gene3D - 10 383 - -
Gabi3820g00082 594 FunFam Heat shock 70 kDa protein 484 594 - -
Gabi3820g00082 594 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00082 Gabi-Chr3820 575236 577997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00082 1 594 Calmodulin-binding Proteins AT3G12580 82.181 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00082 K03283 - gmx:100787543 1055.05