Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00053 ATGTCCCCAACCACCAACGTAGTGGTTCTAGACAACGGCGGCGGCCTCATTAAAGCCGGCCTCGGCGGCGAACGCGACCCCTCCGCCATTCTCCCTAACTGCCTCTACCGCTCCCCCGCCTCTAAAAAATGGCTCCACCCAAATCCCCTCAACCACGCCACCACCACCGAACAAGACCTCACCTCTGCCTCCGTCCGCCGCCCCATGGACAGAGGTTACCTAATAAATCCAGACCTCCAGCGCGAAATCTGGTCCAACCTATTTTCCTCGATCCTCCGTATAAACCCTTCACACTCCTCCCTCCTCGTCACGGAACCCCTCTTCACTCTGCCCTCCATCCAACGCTCAATGGACGAGCTCGTCTTCGAAGATTTCAACTTCAGGTCACTCTACGTTGCCGACTCACCCTCCCTCGTTCACCTCTACGAGGCCAGCCGCAGGCCCAATGGGCTCGTCTCCAGGGCCCAGTGCAGCCTCGTCGTGGACTGTGGCTTCTCCTTCACGCACGCTTCCCCTGTGTTCCAGAACTTCACCCTAAACTACGGCGTTAAGAGGATCGATTTGGGTGGGAAAGCCCTCACCAATTACCTGAAGGAACTTGTCTCCTTTCGCGCTGTTAATGTCATGGAAGAAACATTCATCATCGATGATGTCAAGGAAAAGCTTTGCTTCGTTTCCCTCGACGTCCCTCGCGACCTCCACATCGCCAGTGGAAAAGAGAATCTCTTCAGGAGCACATATGTGCTACCTGATGGTGTTACATACACGAAGGGGTTTGTTAAATATCCAGAGAAAGCGTGCCAATATCTTGCTTTGAGGGATGGTGGTTTTCCTCCTCCTTCTATTCCACCTTTGGAAACTAGGAGGGATATGAATTGCAACGAAATTGTTGAGCAGCCTGAGGAGGACAGAAAGAGAGTTGATTTGACAAAAAATGAATTCGACTTGACAAACGAACGGTTTCTTGTCCCGGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAGTGCATTGTACGAGCTGTTAATTCCTGCCACCCACATCTCCACCCTGTGCTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCTGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCATGTGAAGATAACTACTCAAGAGGACCCCATACTGGGTGTTTGGCGAGGAGGATCGCTGTTGGCATCGAGTCCAGATTTTGAAGCAATGTGCGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 1329 0.5139 MSPTTNVVVLDNGGGLIKAGLGGERDPSAILPNCLYRSPASKKWLHPNPLNHATTTEQDLTSASVRRPMDRGYLINPDLQREIWSNLFSSILRINPSHSSLLVTEPLFTLPSIQRSMDELVFEDFNFRSLYVADSPSLVHLYEASRRPNGLVSRAQCSLVVDCGFSFTHASPVFQNFTLNYGVKRIDLGGKALTNYLKELVSFRAVNVMEETFIIDDVKEKLCFVSLDVPRDLHIASGKENLFRSTYVLPDGVTYTKGFVKYPEKACQYLALRDGGFPPPSIPPLETRRDMNCNEIVEQPEEDRKRVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYHVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00053 442 FunFam ARP5 actin-related protein 5 homolog 338 404 - -
Gabi3820g00053 442 PANTHER ACTIN 8 433 IPR004000 -
Gabi3820g00053 442 SUPERFAMILY Actin-like ATPase domain 156 441 IPR043129 -
Gabi3820g00053 442 SUPERFAMILY Actin-like ATPase domain 5 141 IPR043129 -
Gabi3820g00053 442 FunFam Putative actin-related protein 6 194 282 - -
Gabi3820g00053 442 FunFam Actin-related protein 6 133 193 - -
Gabi3820g00053 442 Gene3D - 307 412 - -
Gabi3820g00053 442 SMART actin_3 5 441 IPR004000 -
Gabi3820g00053 442 Gene3D Actin; Chain A, domain 4 188 268 - -
Gabi3820g00053 442 Gene3D - 2 170 - -
Gabi3820g00053 442 FunFam Putative actin-related protein 5 405 433 - -
Gabi3820g00053 442 Pfam Actin 4 441 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00053 Gabi-Chr3820 458709 462196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00053 8 441 Cytoskeleton Gene Families AT3G12110 26.712 3.71e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00053 K11662 - gmx:100819827 729.169