Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00052 ATGGCAAAACAATATGAGGGATGTGCGGTGGGAATAGACCTTGGCACAACATACTCATGTGTTGCAGTATGGCAAGAGCAACACAATCGCGGGGAGATCATTCACAACGACCAGGGCAACACTATTACTCCTTCTTGTGTTGCTTTTACTGACAACCAAAGGTTGATTGGCGATGCTGCTAAGAATCAGGCTGCCTCCAACCCCACCAACACTGTCTTTGATGCGAAAAGGCTGATTGGTAGAAGATATAGTGATCCCATTATTCAGAATGATCTAATGCTATGGCCATTCAAGGTCATTGCTGGTACTAATGACAAACCGATGATCCTTGTTTCATACAAGGGTCAGGAAAAACAAATATCTGCTGAGGAAATCTCATCCATGGTCCTCACAAAGATGCGTGAGATTGCAGAGGCATATTTGGAGTCACCGGTGAAGAATGCTGTTGTTACTGTTCCTGCTTATTTCAATGACTCTCAGCGTCAAGCTACCAAAGATGCTGGTGCCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCCACCGCTGCAGCTCTTGCATATGGCCTTGAAAAAAGATCTAATTGTGTTGGTGAGAGAAATATTTTTATCTTTGATCTTGGTGGTGGTACATTTGATGTGTCTCTCCTCACAATTAAGGGTGATGTCTTTGAAGTTAAGGCCACTGCTGGAGACACTCACCTTGGAGGAGAGGACTTTGATAATAGAATTGTGAACTACTTTGCACAGGAGTTCAAGAGGAAGAAGAAAGTGGACATTAGTGGGAACCCAAGAGCCCTGAGGAGGTTGAGAACTGTGTGTGAGAGGGCAAAAAGGACACTCTCATACGCAGTTGATACTGCTGTTGAAGTAGATGCTTTATTTGAGGGCATTGACTTATGTTCATCAATCACTCGAGCAAGGTTTGAGGAAATCAACATGGACCTCTTTACAAAATGCATGGAGACCGTAGATAGGTGTCTTATTGATTCCAAGATGGACAAGAGTAATGTACATGATGTTGTTCTTGTTGGTGGCTCTAGTAGGATTCCCAAGGTGCAGCAGTTATTGCAGGACTTCTTCAAGGGGAAGGATCTCTGCAAGAGCATCAACCCGGACGAGGCTGTTGCTTATGGAGCAGCTGTCCAGGCTGCTTTGTTGAGTAAAAGCAATAGGTTTGTTCCGAATATAGTGTTAATGGATGTTACACCGCTGTCACTTGGTGTATCAGTAGTAGGTGATCTCATGAGTGTGGTGATTCCTAGGAACACTACCATTCCTGTAAAGAAGACAAAAACTTTTGTTACAACTGTAGATAACCAATCAACTGCCTTGATTGAGGTTTATGAGGGTGAGAGGACAAGAGCCAGCGATAATAACTTGTTGGGTTCGTTTAATCTTTCACTTCCTCCTGCTCCACGAGGCCTTCTTATGGAAGATTGCTTTGCTATAGATGCTGATGGTATCCTAACTGTTTCTTCTAAGGAAAAAGCCACTGGCAATGAGAAAGAGATTATCATAACCAATGACAAAGGAAGACTATCAATTCAACAAATTCGGAGCATGATTCAAGAAGCTGAGAAATACAAGGATGAAGATGAGAAGTACCAGAAGAAAGTTACAGCAATGAATGCTTTGGATGATTATGTTTACAAGATACAGAATGCTGTGTATAATATTAATATCAGATCTAAGCTTCGTCCAGAAGACAAAATGAAGATTAGTTCAGTGATTGCGAAAGCCAGAAATTTGCTTGATAACAGCCAGCAGATAGAAACAAAGGTGTATGAGGATTATTTGAAGGAGTTAAAGAGCATCTTTGGACCTATTGTCAGGATTGGCTAG 1848 0.421 MAKQYEGCAVGIDLGTTYSCVAVWQEQHNRGEIIHNDQGNTITPSCVAFTDNQRLIGDAAKNQAASNPTNTVFDAKRLIGRRYSDPIIQNDLMLWPFKVIAGTNDKPMILVSYKGQEKQISAEEISSMVLTKMREIAEAYLESPVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLEKRSNCVGERNIFIFDLGGGTFDVSLLTIKGDVFEVKATAGDTHLGGEDFDNRIVNYFAQEFKRKKKVDISGNPRALRRLRTVCERAKRTLSYAVDTAVEVDALFEGIDLCSSITRARFEEINMDLFTKCMETVDRCLIDSKMDKSNVHDVVLVGGSSRIPKVQQLLQDFFKGKDLCKSINPDEAVAYGAAVQAALLSKSNRFVPNIVLMDVTPLSLGVSVVGDLMSVVIPRNTTIPVKKTKTFVTTVDNQSTALIEVYEGERTRASDNNLLGSFNLSLPPAPRGLLMEDCFAIDADGILTVSSKEKATGNEKEIIITNDKGRLSIQQIRSMIQEAEKYKDEDEKYQKKVTAMNALDDYVYKIQNAVYNINIRSKLRPEDKMKISSVIAKARNLLDNSQQIETKVYEDYLKELKSIFGPIVRIG 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00052 615 PANTHER HEAT SHOCK PROTEIN 70KDA 9 574 IPR013126 GO:0005524|GO:0140662
Gabi3820g00052 615 Gene3D - 194 368 - -
Gabi3820g00052 615 Pfam Hsp70 protein 9 611 IPR013126 GO:0005524|GO:0140662
Gabi3820g00052 615 CDD HSPA1-2_6-8-like_NBD 9 389 - -
Gabi3820g00052 615 FunFam Heat shock cognate 70 kDa protein 2 321 368 - -
Gabi3820g00052 615 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Gabi3820g00052 615 FunFam Heat shock 70 kDa protein 73 128 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 38 50 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 60 68 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 339 355 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 211 221 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 476 492 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 371 391 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 148 168 - -
Gabi3820g00052 615 PRINTS 70kDa heat shock protein signature 397 416 - -
Gabi3820g00052 615 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 548 IPR029047 -
Gabi3820g00052 615 Gene3D - 10 386 - -
Gabi3820g00052 615 FunFam Heat shock protein 70 10 200 - -
Gabi3820g00052 615 FunFam Heat shock 70 kDa protein 391 544 - -
Gabi3820g00052 615 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi3820g00052 615 FunFam Heat shock 70 kDa 237 320 - -
Gabi3820g00052 615 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 612 IPR029048 -
Gabi3820g00052 615 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Gabi3820g00052 615 Gene3D - 544 614 IPR029048 -
Gabi3820g00052 615 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Gabi3820g00052 615 Gene3D - 73 128 - -
Gabi3820g00052 615 Gene3D Actin; Chain A, domain 4 237 320 - -
Gabi3820g00052 615 Coils Coil 520 540 - -
Gabi3820g00052 615 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Gabi3820g00052 615 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 543 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00052 Gabi-Chr3820 452295 455494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00052 1 612 Calmodulin-binding Proteins AT3G12580 69.268 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00052 K03283 - gmx:102667578 890.567