Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00036 ATGGATGAGCAAATTAAGCCATCTCCTAATATATTAGTACAGTGTCGAATATGCCACGATGAGGATGAAGACTCAAACATGGAGACACCCTGTTCTTGTTGTGGCACCTTAAAGTATGCACATAGAAAATGTGTTCAAAGATGGTGTGATGAGAAAGGTGATACTACCTGTGAGATTTGCCAACAGCAACTTAAGCCAGGCTATACTGCACCGCCACCACCTCCCCTAACATATTATGGTGGTTCTCCAACAAATTTTGGAGGGAACTGGGAGATTTCAAGAAGGGATCTTCATAATCATCACTTCATAGCATTATTAGCAGCTTATCGCGAATTCCTAGACCCTGAAATTGAATATCCAGCACCCTCTACAAGGAGCCTGATATGCTGCCGAATTATTGCTATTATATTTATTGTTCTTCTTGTTTTACGCCATACACTTCCAATCATATTTATAATCAGTGGAGGGGGAGAGTATTCATTGATAGTGTTTATGTTCGAAGGATTGAGAATTATTGGAATAATGGTACCAGTGTATATAATGGTTAAAGCTATTATTGCTATCCAACGGCTTCAATATCAGGATCATCATACCCCAATGCAATCACTTGGGGAAAATGACATGGGGCACTCTCAGTTTCGTGTCATTCATATTGGGTGA 660 0.3985 MDEQIKPSPNILVQCRICHDEDEDSNMETPCSCCGTLKYAHRKCVQRWCDEKGDTTCEICQQQLKPGYTAPPPPPLTYYGGSPTNFGGNWEISRRDLHNHHFIALLAAYREFLDPEIEYPAPSTRSLICCRIIAIIFIVLLVLRHTLPIIFIISGGGEYSLIVFMFEGLRIIGIMVPVYIMVKAIIAIQRLQYQDHHTPMQSLGENDMGHSQFRVIHIG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00036 219 FunFam Zinc finger family protein 3 70 - -
Gabi3820g00036 219 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 193 IPR033275 -
Gabi3820g00036 219 SMART ringv_2 14 61 IPR011016 GO:0008270
Gabi3820g00036 219 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Gabi3820g00036 219 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Gabi3820g00036 219 Pfam Protein of unknown function (DUF3675) 66 185 IPR022143 -
Gabi3820g00036 219 SUPERFAMILY RING/U-box 13 64 - -
Gabi3820g00036 219 CDD RING_CH-C4HC3_MARCH 15 61 - -
Gabi3820g00036 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00036 Gabi-Chr3820 300499 302325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00036 14 62 C3H Transcription Factor Family AT2G37950 50.000 5.67e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00036 - - gmx:100784696 322.398