Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00034 ATGGCCTTACAGAACATTGGTGCTGCAAATAGTGATGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACCAATGTTGTCAATATGGTTGATATTGCAAAGGCTTTGGCGAGGCCAGCATCTTACACAACAAAGTATTTTGGTTGTGAACTCGGGGCCCAGTCAAAATTTGATGAGAAGACTGGCACTTCTCATGTTAATGGAGCACATGATACTGCAAAGCTTGCTGGCCTTCTCGAGAACTTCATCAAGAAATATGTCCAATGCTATGGTTGTGGAAATCCTGAAACTGATATTTTGATTACTAAGAATCAAATGATCCAGCTGAAATGTGCTGCTTGTGGATTTATGTCTGATGTGGATATGAGAGACAAGCTGACCACCTTCATCATTAAGAACCCTCCTGAAGTAAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGAATGAAGGAAGGGGAAGCAGCTGACGAGGAACTGAAAAAACTGAAGAAAGAGGTTAAGAAGAAAGGCCCTTCATCTTCAAAGGATGGCACCACAAAATCCACATCATTGAAGAAGAAAGCAAGTGGCTCTGATGAAGATCGTGTCTCGCCCGCTCATAGTCAAATTGATGAGAAAGAGGAGGCTCATGATGAAGATGACGATGATGTACAATGGCAAACTGATACATCACTATATGCTGCTCGTCAACGTATCCAAGAGCAGTTAAGTGCCGTGACAGCTGATATGGTCATGCTCTCCACAAATGAACCGGAGAAGAAGGAGAAAGAAGCAACTAAGGCGAGTGATAATTCTGAGAATGGTAACTCTATGCACTACAGGACACTGGTTGGGGAAGTCAAATCAAATCTGAAGAAGGGTGTTACAGCCAAAGAATTGCTGTCCAATCTGGCAGCACTTCCTGCATCTGCTCAAGAAAAGATGAGTGCTCTCTATGAAGCACTATTCGAGGGCATTGAGAAAGGGTTTGGAAAGGAAGCAATTAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCTGAGGAAGAGGCTCTGCAGTTGCTATTGCTGCGTGCAATTGAGGAATTTTCTTGCAAGTCCACTTCCAATGCATTAAAGGAGGTTGGCCTGGTTCTGAAGGCACTCTATGATGCTGATGTGTTGGATGAAGATCATATAGTGCAGTGGTATCAACAAGGGCTGAAAGGCGATAACAAGGACTCTATGATTTGGAAGAATGTTCGACCCTTCATTGATTGGCTTCAGACTGCGGAATCAGAATCAGAGGAAGAATAA 1326 0.4314 MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDILITKNQMIQLKCAACGFMSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERMKEGEAADEELKKLKKEVKKKGPSSSKDGTTKSTSLKKKASGSDEDRVSPAHSQIDEKEEAHDEDDDDVQWQTDTSLYAARQRIQEQLSAVTADMVMLSTNEPEKKEKEATKASDNSENGNSMHYRTLVGEVKSNLKKGVTAKELLSNLAALPASAQEKMSALYEALFEGIEKGFGKEAIKKKNYLAAAVAEEEALQLLLLRAIEEFSCKSTSNALKEVGLVLKALYDADVLDEDHIVQWYQQGLKGDNKDSMIWKNVRPFIDWLQTAESESEEE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00034 441 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Gabi3820g00034 441 SUPERFAMILY ARM repeat 291 435 IPR016024 -
Gabi3820g00034 441 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 440 IPR045196 GO:0003743|GO:0006413
Gabi3820g00034 441 Gene3D - 2 104 - -
Gabi3820g00034 441 MobiDBLite consensus disorder prediction 265 288 - -
Gabi3820g00034 441 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Gabi3820g00034 441 MobiDBLite consensus disorder prediction 147 235 - -
Gabi3820g00034 441 MobiDBLite consensus disorder prediction 266 280 - -
Gabi3820g00034 441 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Gabi3820g00034 441 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Gabi3820g00034 441 MobiDBLite consensus disorder prediction 148 225 - -
Gabi3820g00034 441 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Gabi3820g00034 441 Pfam eIF4-gamma/eIF5/eIF2-epsilon 363 441 IPR003307 GO:0005515
Gabi3820g00034 441 CDD W2_eIF5 294 439 - -
Gabi3820g00034 441 Gene3D - 281 441 - -
Gabi3820g00034 441 Gene3D - 105 145 - -
Gabi3820g00034 441 ProSiteProfiles W2 domain profile. 281 441 IPR003307 GO:0005515
Gabi3820g00034 441 SMART 542_3 349 437 IPR003307 GO:0005515
Gabi3820g00034 441 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00034 Gabi-Chr3820 289972 292885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00034 1 434 Eukaryotic Initiation Factors Gene Family AT1G36730 64.865 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00034 K03262 - gmx:100796346 654.055