Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00031 ATGGATTCCAAATCCAAACCCCAAACCCTAAACTCCACCCAATTGTACCTCACCGCCCACAAATCTCTTCAACCTTCTTCACCACCACCGTCACCACCCTCCTCCGTCCCAGTCCCACCCTCCTTCCCCCACTCCAAACTCATCCCCAAAACCCGCTTCCTCGTCGACGCCTTCCGCTACGCCGGCGACTACTCCGTCTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACGCCGGCCTCTCCTCCACCTGGTCCCGCGGCATCATCTTCTGCTCCGACACCACCGCCAACCTCCTCCTCCATGTCCTCAATGTCCCCTCCCCCTTCGTATTCCCTCTCCCTCTCCGCCAACCGCTTCAAATCGACGGCTCCGAAATCACCCTCGTCGACGCCAACCACTGCCCTGGCGCCGTCCAATTCCTCTTCAAAATCCCCGCCGCCGCCGACGGAATCAACTGCGAGAGGTATGTTCACACTGGCGATTTCCGGTTTTGTAGTTCGATGGTATCGGAACCTGCTCTCGCTCCGTTTATTGGTGCTGATGCTGTGTTCTTAGACACTACCTATTGCCACCCTAAGTTTTTGTTTCCTTCACAAGACGAGTCTGTTGATTATGTTGTTGGTGTTGTGGAGAGTGTTGAGGGTGAGTGCGATGATAATAACAGTGTTTTGTTTCTTGTTGCTACTTATGTCATTGGGAAAGAGAGGATTTTGCTTGAGCTTGCCAGGAGGTTTAACCGGAAGATACACGTGGATGCTAGGAAGATGCAGGTTTTGCGGGCTCTTGGGTATGGAGAGAGTGGTGTGTTTACTGAGGATGGATTGGAAACTAATATTCATGTTGTTGGGTGGAATGTCTTGGGGGAGACTTGGCCTTACTTTAGGCCCAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCAAAGGTTGTTGGTTTTGTTCCGACTGGATGGACCTATGAAGTGAAGCGCAATAGGTTTGCTGTGAGGTCTAAGGATTCGTTTCAGATTCATCTTGTGCCGTATAGTGAGCATTCGAACTATGAGGAGCTCAGGGAATATGTAAAGTTTTTGAAACCGAAGCGTGTTGTTCCTACGGTGGGTTTGGATGTTGAGAAAAGTGACAGTAAACATGCTAACAAAATGAGGAAGTATTTTGCTGGATTAGTTGATGAGACAGCCAACAAGCAGGAGTTTTTAAGGGGTTTTCGTCGTGGTGCAGGTGAAATGGTTGAGAAGGATGTTAGTGATGCTTTGAAAACAGGGCAAGGCATCGAGAAAGAAATCGGGGCATCTGACAGGGAAGGAAATAGAAGTATTAATCCAGATAATGCTGTGAGTTTGTCCTCTTTTACTGGAGAAACTTGCACACGAGATCCTACTTTACTAAATGATGAAGAAAAAGAAAAAATAATTCAAGAACTTAGTTGTTGTTTGCCCACATGGGTCACTCGAAGCCAGGTGTTAGATCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACGGAATTTCATCAGCAAGTATATTCCTCTCAAACTTCTGTTTCAATGTCCAAGTGCTGCTCGTCAAGTGACACTGATTCACTTTCAAAAACATGCATTAATACAAACAAGACTTACAGCAATGTTGACATTTTTCCAAGTCAAGAATCTAAATTAACTAACCTGAGGCATACAGTACCAAATCGCTTTTCCCCAGCCAAAAGGAAGAAAAGTAGTGAAAGTAAGCCAAACAAGAAAGTAAAAGCCAGAGCAAAATCAGAATCAAGTGGTTCAAAGCAGCCCGCTATAACAAGATTCTTCAGCAAAGTATTGCCTGATATGCCTGGTAGTACTCAATCTGATCATTTTGACCAAAGCCCTAAAGTTGAAGACTTGTTGCCAAATGATGTTGGAGAATTATATAAGGATGAGATTGATCAGTTTATGCAAATAATAAACGGGAATGAGTCGTTAAAAAAGTATGCCATCACTATAATTGAGAAGGCAAAAGGAGATGTTAATAAGGCTTTGGATATGTATTATTGTAATTCTGGCAATCTTGGTGAAAATGAAATATCAGTTCAAGCAGAGTGCAAAATCGGCAGACCTTTAGAGAAGAAGTATGTGTCACAGGAATTGACAATTATACCTGATATTTCTGTGCAGAGAGTGTTAAGAGATAATGTAGATGCAACTCATGTATGTTTACCACCTAAGAAATACAACCCTAAAGAACATGCGTGTTGGAGAGATGGAGAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACCTACTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCAGATGTTCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTCCGGACCATGAAAATATGGAACTAAATATTGGTGGAAGTTTAGTCACTGCTGCACTTGAAGAGTCATGCGGAACAAACCGATCGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAAAGATTGCTTGCACCACCAGCACCACTTCTAATAAAGGATGTTTTCTCTGCTCTACAAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATAAAGTTTCTTGTACGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTCAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTTGCCCTTCTGTGCACGAAGAAGAAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATTCTGCCAAATTTGGCTCTCATAGTCCCATCTCTCATGAACACAGGCATTGATTTTTCGGTTTCAAATTTATCAATGATTCCAGGAATCCCTATTAAGCCTATGCTTGCGAAGATCACCAATGGCATTCCCCAAGTATTGAAGCTGTTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTACTTGATGGATCAATTTGTGTCTTTTCAAGAAATGGAGATGAATCGACATCAAGATTTCCTGATCTGATCGACATAATTAAGGATTCCTGCAAGCCTGTTGCATCAACTTTCATTATAGATGCAGAAGTTGTTGGTATTGATAGAAAAAATGGATCTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAAGCAAAGATACTTTAGTTACTACAGAGCGCATAAAGGCTATTGGGTTTTCCTCTCCGCCTAAGACGAAAGCATCTGAAGGATTTGTTCCATGA 3429 0.4293 MDSKSKPQTLNSTQLYLTAHKSLQPSSPPPSPPSSVPVPPSFPHSKLIPKTRFLVDAFRYAGDYSVSYFLSHFHSDHYAGLSSTWSRGIIFCSDTTANLLLHVLNVPSPFVFPLPLRQPLQIDGSEITLVDANHCPGAVQFLFKIPAAADGINCERYVHTGDFRFCSSMVSEPALAPFIGADAVFLDTTYCHPKFLFPSQDESVDYVVGVVESVEGECDDNNSVLFLVATYVIGKERILLELARRFNRKIHVDARKMQVLRALGYGESGVFTEDGLETNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVRSKDSFQIHLVPYSEHSNYEELREYVKFLKPKRVVPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLRGFRRGAGEMVEKDVSDALKTGQGIEKEIGASDREGNRSINPDNAVSLSSFTGETCTRDPTLLNDEEKEKIIQELSCCLPTWVTRSQVLDLISISGSNVVEAVSNFYERETEFHQQVYSSQTSVSMSKCCSSSDTDSLSKTCINTNKTYSNVDIFPSQESKLTNLRHTVPNRFSPAKRKKSSESKPNKKVKARAKSESSGSKQPAITRFFSKVLPDMPGSTQSDHFDQSPKVEDLLPNDVGELYKDEIDQFMQIINGNESLKKYAITIIEKAKGDVNKALDMYYCNSGNLGENEISVQAECKIGRPLEKKYVSQELTIIPDISVQRVLRDNVDATHVCLPPKKYNPKEHACWRDGEPAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAPDHENMELNIGGSLVTAALEESCGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPAPLLIKDVFSALQKISVQTGNGSTFRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSCPSVHEEETAENLKEKLQVLSVAVVEAYNILPNLALIVPSLMNTGIDFSVSNLSMIPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHRLLDGSICVFSRNGDESTSRFPDLIDIIKDSCKPVASTFIIDAEVVGIDRKNGSRIMSFQELSSRGRGSKDTLVTTERIKAIGFSSPPKTKASEGFVP 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00031 1142 Pfam DNA ligase N terminus 763 939 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3820g00031 1142 Gene3D - 743 1008 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3820g00031 1142 MobiDBLite consensus disorder prediction 25 41 - -
Gabi3820g00031 1142 Gene3D DNA ligase/mRNA capping enzyme 1009 1128 - -
Gabi3820g00031 1142 Gene3D - 196 349 - -
Gabi3820g00031 1142 Pfam ATP dependent DNA ligase domain 1009 1117 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi3820g00031 1142 SUPERFAMILY Metallo-hydrolase/oxidoreductase 68 372 IPR036866 -
Gabi3820g00031 1142 Gene3D - 48 371 IPR036866 -
Gabi3820g00031 1142 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1033 1041 IPR016059 GO:0003909
Gabi3820g00031 1142 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 282 1124 - -
Gabi3820g00031 1142 MobiDBLite consensus disorder prediction 569 607 - -
Gabi3820g00031 1142 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 743 992 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3820g00031 1142 FunFam DNA ligase 740 1011 - -
Gabi3820g00031 1142 MobiDBLite consensus disorder prediction 21 41 - -
Gabi3820g00031 1142 MobiDBLite consensus disorder prediction 580 600 - -
Gabi3820g00031 1142 Pfam DNA repair metallo-beta-lactamase 269 372 IPR011084 -
Gabi3820g00031 1142 FunFam DNA ligase 196 349 - -
Gabi3820g00031 1142 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 965 1105 - -
Gabi3820g00031 1142 CDD SNM1A-1C-like_MBL-fold 43 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00031 Gabi-Chr3820 243832 258574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00031 745 1111 Core DNA Replication Machinery Family AT1G08130 37.602 7.65e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00031 - - gmx:100807673 1738.78