Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00030 ATGGATTCCAAATCCAAACCCCAAACCCTAAACTCCACCCAATTGTACCTCACCGCCCACAAATCTCTTCAACCTTCTTCACCACCACCGTCACCACCCTCCTCCGTCCCAGTCCCACCCTCCTTCCCCCACTCCAAACTCATCCCCAAAACCCGCTTCCTCGTCGACGCCTTCCGCTACGCCGGCGACTACTCCGTCTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACGCCGGCCTCTCCTCCACCTGGTCCCGCGGCATCATCTTCTGCTCCGACACCACCGCCAACCTCCTCCTCCATGTCCTCAATGTCCCCTCCCCCTTCGTATTCCCTCTCCCTCTCCGCCAACCGCTTCAAATCGACGGCTCCGAAATCACCCTCGTCGACGCCAACCACTGCCCTGGCGCCGTCCAATTCCTCTTCAAAATCCCCGCCGCCGCCGACGGAATCAACTGCGAGAGGTATGTTCACACTGGCGATTTCCGGTTTTGTAGTTCGATGGTATCGGAACCTGCTCTCGCTCCGTTTATTGGTGCTGATGCTGTGTTCTTAGACACTACCTATTGCCACCCTAAGTTTTTGTTTCCTTCACAAGACGAGTCTGTTGATTATGTTGTTGGTGTTGTGGAGAGTGTTGAGGGTGAGTGCGATGATAATAACAGTGTTTTGTTTCTTGTTGCTACTTATGTCATTGGGAAAGAGAGGATTTTGCTTGAGCTTGCCAGGAGGTTTAACCGGAAGATACACGTGGATGCTAGGAAGATGCAGGTTTTGCGGGCTCTTGGGTATGGAGAGAGTGGTGTGTTTACTGAGGATGGATTGGAAACTAATATTCATGTTGTTGGGTGGAATGTCTTGGGGGAGACTTGGCCTTACTTTAGGCCCAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCAAAGGTTGTTGGTTTTGTTCCGACTGGATGGACCTATGAAGTGAAGCGCAATAGGTTTGCTGTGAGGTCTAAGGATTCGTTTCAGATTCATCTTGTGCCGTATAGTGAGCATTCGAACTATGAGGAGCTCAGGGAATATGTAAAGTTTTTGAAACCGAAGCGTGTTGTTCCTACGGTGGGTTTGGATGTTGAGAAAAGTGACAGTAAACATGCTAACAAAATGAGGAAGTATTTTGCTGGATTAGTTGATGAGACAGCCAACAAGCAGGAGTTTTTAAGGGGTTTTCGTCGTGGTGCAGGTGAAATGGTTGAGAAGGATGTTAGTGATGCTTTGAAAACAGGGCAAGGCATCGAGAAAGAAATCGGGGCATCTGACAGGGAAGGAAATAGAAGTATTAATCCAGATAATGCTGTGAGTTTGTCCTCTTTTACTGGAGAAACTTGCACACGAGATCCTACTTTACTAAATGATGAAGAAAAAGAAAAAATAATTCAAGAACTTAGTTGTTGTTTGCCCACATGGGTCACTCGAAGCCAGGTGTTAGATCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACGGAATTTCATCAGCAAGTATATTCCTCTCAAACTTCTGTTTCAATGTCCAAGTGCTGCTCGTCAAGTGACACTGATTCACTTTCAAAAACATGCATTAATACAAACAAGACTTACAGCAATGTTGACATTTTTCCAAGTCAAGAATCTAAATTAACTAACCTGAGGCATACAGTACCAAATCGCTTTTCCCCAGCCAAAAGGAAGAAAAGTAGTGAAAGTAAGCCAAACAAGAAAGTAAAAGCCAGAGCAAAATCAGAATCAAGTGGTTCAAAGCAGCCCGCTATAACAAGATTCTTCAGCAAAGTATTGCCTGATATGCCTGGTAGTACTCAATCTGATCATTTTGACCAAAGCCCTAAAGTTGAAGACTTGTTGCCAAATGATGTTGGAGAATTATATAAGGATGAGATTGATCAGTTTATGCAAATAATAAACGGGAATGAGTCGTTAAAAAAGTATGCCATCACTATAATTGAGAAGGCAAAAGGAGATGTTAATAAGGCTTTGGATATGTATTATTGTAATTCTGGCAATCTTGGTGAAAATGAAATATCAGTTCAAGCAGAGTGCAAAATCGGCAGACCTTTAGAGAAGAAGTATGTGTCACAGGAATTGACAATTATACCTGATATTTCTGTGCAGAGAGTGTTAAGAGATAATGTAGATGCAACTCATGTATGTTTACCACCTAAGAAATACAACCCTAAAGAACATGCGTGTTGGAGAGATGGAGAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACCTACTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCAGATGTTCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTCCGGACCATGAAAATATGGAACTAAATATTGGTGGAAGTTTAGTCACTGCTGCACTTGAAGAGTCATGCGGAACAAACCGATCGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAAAGATTGCTTGCACCACCAGCACCACTTCTAATAAAGGATGTTTTCTCTGCTCTACAAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATAAAGTTTCTTGTACGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTCAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTTGCCCTTCTGTGCACGAAGAAGAAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATTCTGCCAAATTTGGCTCTCATAGTCCCATCTCTCATGAACACAGGCATTGATTTTTCGGTTTCAAATTTATCAATGATTCCAGGAATCCCTATTAAGCCTATGCTTGCGAAGATCACCAATGGCATTCCCCAAGTATTGAAGCTGTTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTACTTGATGGATCAATTTGTGTCTTTTCAAGAAATGGAGATGAATCGACATCAAGATTTCCTGATCTGATCGACATAATTAAGGATTCCTGCAAGCCTGTTGCATCAACTTTCATTATAGATGCAGAAGTTGTTGGTATTGATAGAAAAAATGGATCTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAAGCAAAGATACTTTAGTTACTACAGAGCGCATAAAGGTGGACATTTGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGCTATTGGGTTTTCCTCTCCGCCTAAGACGAAAGCATCTGAAGGATTTGTTCCATGATGAGAAACCTGGGTATTTTGAGTATGCAAAGGAAACAACTATCGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACGTTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCGCTCTTCATGTGAAGGAATTATGGTCAAATCTTTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGATAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACTGAGGATTATCAAAGTGTATGCCGTGTGATGTCTGGGTTCTCAGATTCATTTTACATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAACCACCATATTATCAAACAGGAGAGGCACCGGACTTGTGGTTTTGTCCGCAACTTGTTTGGGAAATAAGAGGTGCAGACTTTACAGTTTCCCCAGTTCATCGTGCTGCCATTGGTTTAGTTCATCCTTCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTCGGTGTGTGTCAGACAGAAACCCTGAAGAATGTAGCACAGCTGCCGATATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACAGCTGAAGATTGA 4179 0.4257 MDSKSKPQTLNSTQLYLTAHKSLQPSSPPPSPPSSVPVPPSFPHSKLIPKTRFLVDAFRYAGDYSVSYFLSHFHSDHYAGLSSTWSRGIIFCSDTTANLLLHVLNVPSPFVFPLPLRQPLQIDGSEITLVDANHCPGAVQFLFKIPAAADGINCERYVHTGDFRFCSSMVSEPALAPFIGADAVFLDTTYCHPKFLFPSQDESVDYVVGVVESVEGECDDNNSVLFLVATYVIGKERILLELARRFNRKIHVDARKMQVLRALGYGESGVFTEDGLETNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVRSKDSFQIHLVPYSEHSNYEELREYVKFLKPKRVVPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLRGFRRGAGEMVEKDVSDALKTGQGIEKEIGASDREGNRSINPDNAVSLSSFTGETCTRDPTLLNDEEKEKIIQELSCCLPTWVTRSQVLDLISISGSNVVEAVSNFYERETEFHQQVYSSQTSVSMSKCCSSSDTDSLSKTCINTNKTYSNVDIFPSQESKLTNLRHTVPNRFSPAKRKKSSESKPNKKVKARAKSESSGSKQPAITRFFSKVLPDMPGSTQSDHFDQSPKVEDLLPNDVGELYKDEIDQFMQIINGNESLKKYAITIIEKAKGDVNKALDMYYCNSGNLGENEISVQAECKIGRPLEKKYVSQELTIIPDISVQRVLRDNVDATHVCLPPKKYNPKEHACWRDGEPAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAPDHENMELNIGGSLVTAALEESCGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPAPLLIKDVFSALQKISVQTGNGSTFRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSCPSVHEEETAENLKEKLQVLSVAVVEAYNILPNLALIVPSLMNTGIDFSVSNLSMIPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHRLLDGSICVFSRNGDESTSRFPDLIDIIKDSCKPVASTFIIDAEVVGIDRKNGSRIMSFQELSSRGRGSKDTLVTTERIKVDICIFVFDIMFANGEQLLGFPLRLRRKHLKDLFHDEKPGYFEYAKETTIEADDACLTCEATLTKINAFLEDALRSSCEGIMVKSLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEDYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEAPDLWFCPQLVWEIRGADFTVSPVHRAAIGLVHPSRGISIRFPRFIRCVSDRNPEECSTAADIAEMFHSQTRKMDVTAED 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00030 1392 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 743 992 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3820g00030 1392 Gene3D - 196 349 - -
Gabi3820g00030 1392 Gene3D - 48 371 IPR036866 -
Gabi3820g00030 1392 SUPERFAMILY Metallo-hydrolase/oxidoreductase 68 372 IPR036866 -
Gabi3820g00030 1392 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 965 1231 - -
Gabi3820g00030 1392 Gene3D - 1234 1391 IPR012340 -
Gabi3820g00030 1392 Gene3D - 743 1011 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3820g00030 1392 ProSiteProfiles ATP-dependent DNA ligase family profile. 1120 1267 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi3820g00030 1392 FunFam DNA ligase 196 349 - -
Gabi3820g00030 1392 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1033 1041 IPR016059 GO:0003909
Gabi3820g00030 1392 MobiDBLite consensus disorder prediction 569 607 - -
Gabi3820g00030 1392 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 282 1385 - -
Gabi3820g00030 1392 MobiDBLite consensus disorder prediction 21 41 - -
Gabi3820g00030 1392 FunFam DNA ligase 1234 1391 - -
Gabi3820g00030 1392 FunFam DNA ligase 740 1011 - -
Gabi3820g00030 1392 Pfam ATP dependent DNA ligase C terminal region 1255 1363 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gabi3820g00030 1392 MobiDBLite consensus disorder prediction 25 41 - -
Gabi3820g00030 1392 Gene3D - 1019 1233 - -
Gabi3820g00030 1392 Pfam DNA ligase N terminus 763 939 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3820g00030 1392 Pfam DNA repair metallo-beta-lactamase 269 372 IPR011084 -
Gabi3820g00030 1392 CDD OBF_DNA_ligase_I 1238 1381 - -
Gabi3820g00030 1392 NCBIfam ATP-dependent DNA ligase 821 1379 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gabi3820g00030 1392 FunFam DNA ligase 1038 1169 - -
Gabi3820g00030 1392 Gene3D DNA ligase/mRNA capping enzyme 1038 1169 - -
Gabi3820g00030 1392 MobiDBLite consensus disorder prediction 580 600 - -
Gabi3820g00030 1392 SUPERFAMILY Nucleic acid-binding proteins 1238 1382 IPR012340 -
Gabi3820g00030 1392 Pfam ATP dependent DNA ligase domain 1009 1229 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi3820g00030 1392 CDD SNM1A-1C-like_MBL-fold 43 193 - -
Gabi3820g00030 1392 CDD Adenylation_DNA_ligase_I_Euk 998 1232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00030 Gabi-Chr3820 243832 261004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00030 745 1382 Core DNA Replication Machinery Family AT1G08130 39.219 1.04e-166 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00030 - - gmx:100807673 2268.81