Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00010 ATGGTTCGAACCTGCAATAACGATTTTCTCTACTACGCTCCACAGTTTGCGTACTTGGGAGTTTGCAGCAGCACTACTGTTCCCATGTTTAAAGAACAGGTGCAAGCTCTATCTACAAACCTCAATACAAATCAGGACGTATTAAATGCAGGTTTCGCGTTGCAATGGATCGATAATAATAATGAGTGCAGCACATGCTCGCGTTCTCAAGGGGAGTGTGGTTATGATGGAGGATTATTCAAGTGTTTTTGCAAGGATGGAACAAATTCGTGTAGAGACTCAGGTAAAAGCAGTAGCAGCAAAGTAGCTATTGGAATAGGCGTTGCTGGTGGAGTTGCAGCCCTTGTTGTTGGCATTCTTGGCTGTCTGTACTTTGTGAGGCAACGAAGGAAAAAAATTGTGGAGCAATCAAGTGGCAAGGACTTCTTCGTGCCTCCTGTAAGCGGAGACGCTGTTACCTCTACAACTGTTACGTCTCAAAGTGTCTCTTCTTACACTTCTTCAAAGACTGGCTCGGTGCCACCAAAGAGTTTCTACTTTGGTGTCCAGGTGTTTACCTATGAAGAATTGGAGGAAGCTACCAAAAATTTTCACCCTTCTAATGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCCAAGATGGACGTGTCGTTGCCGTGAAACGCCATTATGAAAGCAACTTTAAACGTGTTGAGCAGTTCATGAATGAAGTTCAAATCCTAGCCCGCCTTCGGCATAAGAACCTGGTGACACTCTTTGGATGCACCTCAAGACATAGCCGAGAACTTCTCCTTGTTTATGAATTCATATCTAATGGAACAGTGGCTGATCATCTTCAAGGAAAAAGATCACAATCCAATTTTGTCCCGTGGCATGTAAGATTGAACATTGCAGTTGAAACAGCTGAGGCACTAGCCTACCTGCACGCATCAGATGTCATACACCGTGATGTTAAATCCAACAACATTCTCCTAGATGATGAATTTCGCGTGAAGGTTGCTGATTTTGGTCTCTCGCGGTTGTTCCCAAATGATGTCACGCATGTGTCAACTGCTCCACAAGGAACTCCTGGTTATGTTGACCCTGAGTATTATCAAGTCTACCAACTAACAGATAAAAGTGATGTTTATAGCTTCGGAGTAGTCTTAGTTGAGCTTATATCATCATTACAACCTGTGGACATCAACCGGCATCGCAATGATGTGAACTTGGCTAACATGGCCATCAGTAAAATTCAGAGCCAAGAGTTGCATGAGTTGGTTGATCCATATCTTGGATTTGAAAAAGACTATGCTATAAGGCGGATGACAACAGGAGTTGCAGAATTGGCTTTTAGGTGTTTGCAGCAGCAGAGAGAGATGAGACCCTCCATGGATGAGGTGCTGGAGATCTTGAGAGGAATCAAGAGTGATGAGCTTGGTGCACGGGAAGCTGAAGTAGTTGATGTTAGGACAGATGAAGTTATACTCTTGAACAAGGTTCCTTCGCCGTTTTCACCAGATTCGGTTGTTGATAAATGGGTTAGCGGCTCCTCTGCAACTGATTCCTTATAG 1566 0.4387 MVRTCNNDFLYYAPQFAYLGVCSSTTVPMFKEQVQALSTNLNTNQDVLNAGFALQWIDNNNECSTCSRSQGECGYDGGLFKCFCKDGTNSCRDSGKSSSSKVAIGIGVAGGVAALVVGILGCLYFVRQRRKKIVEQSSGKDFFVPPVSGDAVTSTTVTSQSVSSYTSSKTGSVPPKSFYFGVQVFTYEELEEATKNFHPSNELGEGGFGTVYKGELQDGRVVAVKRHYESNFKRVEQFMNEVQILARLRHKNLVTLFGCTSRHSRELLLVYEFISNGTVADHLQGKRSQSNFVPWHVRLNIAVETAEALAYLHASDVIHRDVKSNNILLDDEFRVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQVYQLTDKSDVYSFGVVLVELISSLQPVDINRHRNDVNLANMAISKIQSQELHELVDPYLGFEKDYAIRRMTTGVAELAFRCLQQQREMRPSMDEVLEILRGIKSDELGAREAEVVDVRTDEVILLNKVPSPFSPDSVVDKWVSGSSATDSL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00010 521 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524
Gabi3820g00010 521 FunFam receptor-like serine/threonine-protein kinase NCRK 173 273 - -
Gabi3820g00010 521 CDD STKc_IRAK 203 472 - -
Gabi3820g00010 521 SUPERFAMILY Protein kinase-like (PK-like) 170 469 IPR011009 -
Gabi3820g00010 521 ProSiteProfiles Protein kinase domain profile. 197 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00010 521 SMART serkin_6 197 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00010 521 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 515 IPR044652 GO:0004672
Gabi3820g00010 521 Pfam Wall-associated receptor kinase C-terminal 18 87 IPR032872 -
Gabi3820g00010 521 CDD TM_EGFR-like 97 132 - -
Gabi3820g00010 521 Gene3D Phosphorylase Kinase; domain 1 173 273 - -
Gabi3820g00010 521 Pfam Protein kinase domain 198 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00010 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Gabi3820g00010 521 FunFam Wall-associated receptor kinase-like 20 274 482 - -
Gabi3820g00010 521 Gene3D Transferase(Phosphotransferase) domain 1 274 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00010 Gabi-Chr3820 82460 89446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00010 22 520 Receptor kinase-like Gene Family AT1G25390 47.461 1.72e-148 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi3820g00010 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00010 - - gmx:100811407 659.833