Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00009 ATGGCTTACCTGCTTATTCAGATAATCCTCTTGATACTGATTCAGATACCTCCTTTTTTAAGCTCCTACGATTATTATAGAGGCTGTGCTAATCTGTTAACTTGTGGGGATATAACAAACATTGGTTTTCCCTTCTGGGGAGACAACCGTCCAAAGGAGTGTGGCCACCCTCTGTTGCAACTGACCTGTCTTAAAAACATAAGCTACATAACCATCAAAGATGTCAAGTACCAGGTTTTGGAGGCCAACCCGGATGAACATACTTTGAAAATTACCAGAGTGGACTACTTGCAAAACTTTTGCCCATCAAAACTTGTCAACACCACCCTTGACACTGAGCTCTTTGTTTATGGGTCAGACTACCAGAACATTACCCTCTTCTATGGTTGTGCTGCTTCAAGTGCTTTCCGCTCCCCCACTGGATTTCTTCCTTGTGTCTCTCTTGATGAAGGTGCTTATACTCAGTTCGGGTCTCTAGGTCCTCCTGTATTTTGCAAACAAAGTGTGGTTGTTCCAGTTTGTGTGTTTTCGATTGATATTAAGGATTTCATCAAAATACAAGGGGCAATCAAGGATGGATTTCTAGTGAGATGGATAGCAGGTATTGAAGAATGTGAAAAATGTAAAAAATCAGGTGGAGTTTGTGGTTATGACATGGTTTCAAAGCAACCAATCTGCTACTACTGCAAAGATCAATCTTGTTCTAATTACTTACCAGGTGCCAAAGTACCTCCACATTCAGGTAAAAGCAGTAGCAGCAAAGTAGCTATTGGAATAGGCGTTGCTGGTGGAGTTGCAGCCCTTGTTGTTGGCATTCTTGGCTGTCTGTACTTTGTGAGGCAACGAAGGAAAAAAATTGTGGAGCAATCAAGTGGCAAGGACTTCTTCGTGCCTCCTGTAAGCGGAGACGCTGTTACCTCTACAACTGTTACGTCTCAAAGTGTCTCTTCTTACACTTCTTCAAAGACTGGCTCGGTGCCACCAAAGAGTTTCTACTTTGGTGTCCAGGTGTTTACCTATGAAGAATTGGAGGAAGCTACCAAAAATTTTCACCCTTCTAATGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCCAAGATGGACGTGTCGTTGCCGTGAAACGCCATTATGAAAGCAACTTTAAACGTGTTGAGCAGTTCATGAATGAAGTTCAAATCCTAGCCCGCCTTCGGCATAAGAACCTGGTGACACTCTTTGGATGCACCTCAAGACATAGCCGAGAACTTCTCCTTGTTTATGAATTCATATCTAATGGAACAGTGGCTGATCATCTTCAAGGAAAAAGATCACAATCCAATTTTGTCCCGTGGCATGTAAGATTGAACATTGCAGTTGAAACAGCTGAGGCACTAGCCTACCTGCACGCATCAGATGTCATACACCGTGATGTTAAATCCAACAACATTCTCCTAGATGATGAATTTCGCGTGAAGGTTGCTGATTTTGGTCTCTCGCGGTTGTTCCCAAATGATGTCACGCATGTGTCAACTGCTCCACAAGGAACTCCTGGTTATGTTGACCCTGAGTATTATCAAGTCTACCAACTAACAGATAAAAGTGATGTTTATAGCTTCGGAGTAGTCTTAGTTGAGCTTATATCATCATTACAACCTGTGGACATCAACCGGCATCGCAATGATGTGAACTTGGCTAACATGGCCATCAGTAAAATTCAGAGCCAAGAGTTGCATGAGTTGGTTGATCCATATCTTGGATTTGAAAAAGACTATGCTATAAGGCGGATGACAACAGGAGTTGCAGAATTGGCTTTTAGGTGTTTGCAGCAGCAGAGAGAGATGAGACCCTCCATGGATGAGGTGCTGGAGATCTTGAGAGGAATCAAGAGTGATGAGCTTGGTGCACGGGAAGCTGAAGTAGTTGATGTTAGGACAGATGAAGTTATACTCTTGAACAAGGTTCCTTCGCCGTTTTCACCAGATTCGGTTGTTGATAAATGGGTTAGCGGCTCCTCTGCAACTGATTCCTTATAG 2025 0.4306 MAYLLIQIILLILIQIPPFLSSYDYYRGCANLLTCGDITNIGFPFWGDNRPKECGHPLLQLTCLKNISYITIKDVKYQVLEANPDEHTLKITRVDYLQNFCPSKLVNTTLDTELFVYGSDYQNITLFYGCAASSAFRSPTGFLPCVSLDEGAYTQFGSLGPPVFCKQSVVVPVCVFSIDIKDFIKIQGAIKDGFLVRWIAGIEECEKCKKSGGVCGYDMVSKQPICYYCKDQSCSNYLPGAKVPPHSGKSSSSKVAIGIGVAGGVAALVVGILGCLYFVRQRRKKIVEQSSGKDFFVPPVSGDAVTSTTVTSQSVSSYTSSKTGSVPPKSFYFGVQVFTYEELEEATKNFHPSNELGEGGFGTVYKGELQDGRVVAVKRHYESNFKRVEQFMNEVQILARLRHKNLVTLFGCTSRHSRELLLVYEFISNGTVADHLQGKRSQSNFVPWHVRLNIAVETAEALAYLHASDVIHRDVKSNNILLDDEFRVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQVYQLTDKSDVYSFGVVLVELISSLQPVDINRHRNDVNLANMAISKIQSQELHELVDPYLGFEKDYAIRRMTTGVAELAFRCLQQQREMRPSMDEVLEILRGIKSDELGAREAEVVDVRTDEVILLNKVPSPFSPDSVVDKWVSGSSATDSL 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00009 674 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Gabi3820g00009 674 SMART serkin_6 350 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00009 674 Gene3D Transferase(Phosphotransferase) domain 1 427 637 - -
Gabi3820g00009 674 ProSiteProfiles Protein kinase domain profile. 350 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00009 674 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Gabi3820g00009 674 Gene3D Phosphorylase Kinase; domain 1 326 426 - -
Gabi3820g00009 674 FunFam Wall-associated receptor kinase-like 20 427 635 - -
Gabi3820g00009 674 CDD STKc_IRAK 356 625 - -
Gabi3820g00009 674 CDD TM_EGFR-like 250 285 - -
Gabi3820g00009 674 Pfam Wall-associated receptor kinase C-terminal 164 230 IPR032872 -
Gabi3820g00009 674 SUPERFAMILY Protein kinase-like (PK-like) 323 622 IPR011009 -
Gabi3820g00009 674 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 668 IPR044652 GO:0004672
Gabi3820g00009 674 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 328 426 - -
Gabi3820g00009 674 Pfam Protein kinase domain 351 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00009 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00009 Gabi-Chr3820 82460 93454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00009 28 673 Receptor kinase-like Gene Family AT1G25390 41.053 1.48e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi3820g00009 Pkinase 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00009 - - aip:107635700 764.222