Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00007 ATGAAACCTCTTCTTCTTCTTCACCAATCTTCCATTTTCATATTGTTGCTCATCACTTTCATCATATCATTCAATATTCCAACATCACTTCATGCGGATGATGATAGCAGGTATACAAACTGCAATAAAACTTTTAGTTGCGGAGACACCATCCCTCCAAATGTTAACCTTGGGTACCCTTTCTGGGGAGGAGAGAGACCACAATATTGTGGTGAGCCTAACTTTGAGCTCACATGCGACAACAACACTGTACCCTGTTGGATCAACATCAGTTCTGTCACATACCGGATTCTTGCTTTGGACTTGGCTTCATGGAATCTCACTCTCGCGAGGGACGTTTTCCGAAATTATGATACTGATTCACCATCTACAATATCTTGTTCAAATGATTACAAGAACAACAGTACCTTTGATCCCTCTGTGTTTAAATACGCTGATGGGGTTGTTCACGCGTCGCTGTTATATGATTGCGGTACTGTTGTTCCAACAAATCCGGGTATGGTTCGAACCTGCAATAACGATATACTCTACTACGCTCCACAGTTTTCGTACTTGGGAGTTTGCAGCAGCGTTACTGTTCCCATGTTTAAAGAACAGGTGCAAGCTCTATCATCTGTAAATTCCAATACAAATCAGGCAGTATTAGATGCAGGTTTCGCGTTGCAATGGATCGATAATAATAATGAGTGCAGCACATGCTTGAGTTCTCAAGGGGAGTGTGGTTCTGATGGGGATCAATTCAAATGTTTTTGCAATGATGGAACAAATTCGTGTACAGACTCAGTTTACAAAGCAAGCTTACCTGATGGCCGTCATGTGGCAGTGAAAGTAATAAGTGAGTCCAAGGGAAATGGAGAAGAGTTCATAAATGAAGTTGCCAGCATTAGCAGAACATCTCATGTGAACATTGTCTCACTTTTGGGTTTTTGTTCTGAGATGAATAAAAGAGCACTAATCTATGAATTGATGCCCAATGGCTCATTGGACAAGTTCATCTATAAAAGTGAATCTCCAAATGCTATTTGTAATTTGGACTGGAACACATTGCACCAAATTGCAATCGGCATTGCTCGAGGACTGGAATACTTGCATCGAGGATGTAGTGCCAGGATTCTGCATCTTGATATCAAACCCCAAAATATCCTCTTGGATGAAGATTTTTGCCCAAAAATCTCTGATTTCGGACTAGCTAAATTATGCCAAAAGAAGGAGAGTATCGTGCCCTTATCGGGCACAAGAGGAACTATAGGATACATTGCACCAGAAGTATTTAACCGAATGTATGGTGGAGTTTCTCACAAATCTGATGTATACAGTTATGGCATGTTGGTTCTTGAAATGATTGGAGGAAGAAAGAATTATGAGAGTGGAGGGTCACAAACCAGTGAAATGTACTTTCCCGACTGGATTTACAAGGATCTTGAGCAAGGCAATATTCCTGCAAGTTGTTTGGCCATCTCAGCCGAAGAAAATGATATGATAATGAAGATTACTTTGGTGAGTCTATGGTGCATTCAACCAAATCCATCAAATAGGCCATCAATGAGTAAAGTAGTAGAGATGTTAGAAGGTCCACTTGACTCAGTGCCATATCCTCCAAAGCCTGTCTTGTATTCTCCTGAATGGCCACCCTTACAAATTTTGGATATATCTTCCAGCAATATGCAAGGGACAAATTCAATAACCACGCAAAATGATGGGTCCATCGAATGA 1713 0.4081 MKPLLLLHQSSIFILLLITFIISFNIPTSLHADDDSRYTNCNKTFSCGDTIPPNVNLGYPFWGGERPQYCGEPNFELTCDNNTVPCWINISSVTYRILALDLASWNLTLARDVFRNYDTDSPSTISCSNDYKNNSTFDPSVFKYADGVVHASLLYDCGTVVPTNPGMVRTCNNDILYYAPQFSYLGVCSSVTVPMFKEQVQALSSVNSNTNQAVLDAGFALQWIDNNNECSTCLSSQGECGSDGDQFKCFCNDGTNSCTDSVYKASLPDGRHVAVKVISESKGNGEEFINEVASISRTSHVNIVSLLGFCSEMNKRALIYELMPNGSLDKFIYKSESPNAICNLDWNTLHQIAIGIARGLEYLHRGCSARILHLDIKPQNILLDEDFCPKISDFGLAKLCQKKESIVPLSGTRGTIGYIAPEVFNRMYGGVSHKSDVYSYGMLVLEMIGGRKNYESGGSQTSEMYFPDWIYKDLEQGNIPASCLAISAEENDMIMKITLVSLWCIQPNPSNRPSMSKVVEMLEGPLDSVPYPPKPVLYSPEWPPLQILDISSSNMQGTNSITTQNDGSIE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00007 570 FunFam PR5-like receptor kinase 323 532 - -
Gabi3820g00007 570 PANTHER RUST RESISTANCE KINASE LR10-RELATED 258 547 IPR045874 GO:0004672
Gabi3820g00007 570 Gene3D Phosphorylase Kinase; domain 1 252 322 - -
Gabi3820g00007 570 Pfam Wall-associated receptor kinase galacturonan-binding 41 110 IPR025287 GO:0030247
Gabi3820g00007 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Gabi3820g00007 570 Gene3D Transferase(Phosphotransferase) domain 1 323 529 - -
Gabi3820g00007 570 SUPERFAMILY Protein kinase-like (PK-like) 261 522 IPR011009 -
Gabi3820g00007 570 SMART serkin_6 245 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00007 570 ProSiteProfiles Protein kinase domain profile. 247 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00007 570 Pfam Wall-associated receptor kinase C-terminal 184 254 IPR032872 -
Gabi3820g00007 570 Pfam Protein kinase domain 261 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00007 Gabi-Chr3820 58861 61357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00007 261 546 Receptor kinase-like Gene Family AT1G66910 62.976 5.47e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3820g00007 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00007 - - aprc:113862598 513.072