Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00005 ATGAAACCTCTTCTTCTTCTTCACCAATCTTCCATTTTCATATTGTTGCTCACTTTCATCATATCATTCAATATTCCAACATCTCTTGGTGCGAATGATGATAGCAAGTATACAAACTGCACTAAAACTTTTAACTGCGGAGACACCATCCCTGCAAACCTCAGGTACCCTTTTTGGGGTGGAGAGAGACCACAGTATTGTGGTGAGCCTCACTATGAGCTCACATGCGACAACATTGTCCCCAAGATCACCATCAATTATGTCACATACAGGATTCTTGCTTTGGACTTGGCTTCACAGAATCTCACTCTCGCGAGGGACGTTTTCTGGAATGATACTGACTCACCCTCTACATCTTGTTCAAATGACTACATGAACAACAGCACCTTTGATCCCTCTGTGTTTATTAAATATGATGATGAGGTTGTTGAAGTGTCGCTGTTATACGATTGCAACACTGTTCCACCAAGTTCAGGTGTTGTTCGAACCTGCCTTGATGAAACTCTCTATTATGCTCCCCAGTTTGCCTACTTGGGAGTTTGCAAGATGATTATTGTTCCCGTGTCTGACGCTATAGCTGCTTATGACCCCAGTTCAATTCAGATACTATTAGATGAAGGTTTCAGGTTGCAATGGATCGAGAATAATAATTATGAGTGCGACACATGCTTGAGTTCTCAAGGGGAGTGTGGTAATGATGAAGGAGAATTCAAATGTTTCTGCAAGGATGGACCTCATAAAACTTCCTGTTCAGACTCAGGGAAGGCTTCAGGTAAAAGCAAGTGGAGCAATCTAGCTGTTGGACTAGGTGCATCTATTGCTGGAGTTGTAACATGTATTGGGTTTATTAGTATAGTGGAAAAGAGGAGAAAATTTCTTGACCACAATGTTGAGGATTTCTTAGAAAGTCATGATTTTTTGGCGCCAAAGCGATACAGTTATTCGGAAGTGAAAAGGATCACAAATTCATTCCGTGATAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGCTTACCTGATGGCCGTCATGTGGCAGTGAAAGTAATAAGTGAGTCCAAGGGAAATGGAGAAGAGTTCATAAATGAAGTTGCTAGCATTAGCAGAACATCTCATGTGAACATTGTCTCACTTTTGGGTTTTTGTTCTGAGATGAATAAAAGAGCACTAATCTATGAATTGATGCCCAATGGCTCATTGGACAAGTTCATCTACAAAAGTGATTCTCCAAATGCTATTTGTAATTTGGACTGGAACACGTTGCACCAAATTGCAATTGGCATTGCTCGAGGACTAGAATACTTGCATCGAGGATGCAGTGCAAGGATTCTGCATCTTGATATCAAACCCCAAAATATCCTCTTGGATGAAGATTTTTGCCCAAAAATTTCTGATTTTGGACTAGCTAAATTATGCCAAAAGAAGGACAGTATTGTGCCCTTATCAGGCACAAGAGGAACTATAGGGTACATTGCCCCAGAAGTATTTAGCCGACTATATGGAGGAGTTTCTCACAAATCTGATGTATACAGTTATGGCATGTTGGTTATTGAAATGATTGGAGGAAGAAAGAATTATGAGAGTGGAGGGTCACAAGCCAGTGAAATGTACTTTCCAGACTGGATTTATAAGGATCTTGAGCAAGGCAATATTCCTGCAAGTTGTTTGGCCATCTCAGAAGAAGAAAAAGATATGGTAAGGAAGATTACTTTGGTGAGTCTATGGTGCATTCAACCATATCCATCAAATAGGCCATCAATGAGTAAAGTAGTAGAGATGTTAGAAGGACCACTTGACTTAGTGCCATTTCCTCCAAAGCCTGGCTTGATTTCTCCTCAAAGGCCACCCTTACAAATTTCAGATATATCTTCTGGGACAAATTCAATGACTACATCAAAGGATGGGTTCATCGAATCAAATGTTTCCTCCTAA 1938 0.4045 MKPLLLLHQSSIFILLLTFIISFNIPTSLGANDDSKYTNCTKTFNCGDTIPANLRYPFWGGERPQYCGEPHYELTCDNIVPKITINYVTYRILALDLASQNLTLARDVFWNDTDSPSTSCSNDYMNNSTFDPSVFIKYDDEVVEVSLLYDCNTVPPSSGVVRTCLDETLYYAPQFAYLGVCKMIIVPVSDAIAAYDPSSIQILLDEGFRLQWIENNNYECDTCLSSQGECGNDEGEFKCFCKDGPHKTSCSDSGKASGKSKWSNLAVGLGASIAGVVTCIGFISIVEKRRKFLDHNVEDFLESHDFLAPKRYSYSEVKRITNSFRDKLGQGGYGVVYKASLPDGRHVAVKVISESKGNGEEFINEVASISRTSHVNIVSLLGFCSEMNKRALIYELMPNGSLDKFIYKSDSPNAICNLDWNTLHQIAIGIARGLEYLHRGCSARILHLDIKPQNILLDEDFCPKISDFGLAKLCQKKDSIVPLSGTRGTIGYIAPEVFSRLYGGVSHKSDVYSYGMLVIEMIGGRKNYESGGSQASEMYFPDWIYKDLEQGNIPASCLAISEEEKDMVRKITLVSLWCIQPYPSNRPSMSKVVEMLEGPLDLVPFPPKPGLISPQRPPLQISDISSGTNSMTTSKDGFIESNVSS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00005 645 Gene3D Phosphorylase Kinase; domain 1 296 396 - -
Gabi3820g00005 645 Gene3D Transferase(Phosphotransferase) domain 1 397 601 - -
Gabi3820g00005 645 Pfam Wall-associated receptor kinase galacturonan-binding 40 105 IPR025287 GO:0030247
Gabi3820g00005 645 Pfam Protein kinase domain 326 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00005 645 MobiDBLite consensus disorder prediction 618 645 - -
Gabi3820g00005 645 ProSiteProfiles Protein kinase domain profile. 322 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00005 645 MobiDBLite consensus disorder prediction 613 645 - -
Gabi3820g00005 645 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Gabi3820g00005 645 FunFam serine/threonine-protein kinase PBS1-like 293 396 - -
Gabi3820g00005 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 294 617 IPR045874 GO:0004672
Gabi3820g00005 645 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Gabi3820g00005 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gabi3820g00005 645 Pfam Wall-associated receptor kinase C-terminal 177 244 IPR032872 -
Gabi3820g00005 645 SMART serkin_6 322 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3820g00005 645 FunFam PR5-like receptor kinase 397 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00005 Gabi-Chr3820 48081 51113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00005 5 633 Receptor kinase-like Gene Family AT5G38260 41.203 7.88e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3820g00005 Pkinase 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00005 - - aprc:113862598 735.332