Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi381g00006 ATGGGTAACCAGAGAAAGGTGTTTCCAAGCGAAGAAGATGTACCAGCATCACCAAGGGGCGTATTTGAGGTTCCTATTTCGGGCACATATTCGGACAGCACTGGAAGCAGCAATTACAATTACAGTTCTGGGTTGTCATGGATGGGCCCACATAAGCTACATACGAAAGAAGGCCATCACGGACAACAATGGAAGACCATGATCGATACCTTCAAATCTGTTCGAAGATTCTCGAACATTCCTCTGCTTGCGGCTAGCTACGAGATCTCTAGAAGGAGCTTGAGGAATAAGTTGGCTCGTATTCGACCAGCTAACGAAGATGATGATTATAATTTGGATGCTGCTATTGATCTTGACGCTATTGCCACCAAGCCTTCTTGGAAGAACTTCGGCTACGCAGAACTCGTTGCTGCAACGGACGATTTCAACCCTGAGAACATGATTGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGACGTTTACCTGATGGTCAAGTTGTAGCAGTAAAGAGGCTAATGAAGAACGAAAAGGAAGTTGAGGACAGAGCTGGTGATTTCTTGACAGAACTTGGGATTATTGCTCACATAAATCACCCAAATGCAACACGCCTTATTGGGTTTGGAATTGATCGTGGCCTCTACTTTGTTCTACAATTAGCCCCACATGGCAGCCTTGCGTCTTTGCTCTTTGGTTCTGAATGCTTAGAGTGGAAGATAAGGTTCAAGGTAGCTATTGGGGTAGCAAAAGGATTGCAATATCTCCATCATGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACAATAATAATGAAGCTGAGATTTCAGATTTCGGATTGGCAAAGTGGCTTCCAGATAAGTGGGCCCACCATGTTGTCTTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTTATGCATGGACTTGTGGATGAAAAGACTGATGTTTTCGCATTTGGGGTTTTGTTATTGGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGCAGGGAAAGTCTTGTGATCTGGGCCAAACCACTGTTGGACGCAAAGATGGTCAAGGAAATAGCAGATCCCAGATTAACAGAACAATATGATCCCACAGAAATGAAGTGTGCCATGGCAACTGCTTCTATGTGTATCCACCACATGTCCTCTAGGCGGCCATACATGAACCAGGTTCTGCAGCTATTGAAGGGCGAAGAGGTGGCTGTAGAACTGAGTCAAAAATCAATAGCTCCAAGATCGCTCTTGTTAGATGCCTGTGACCTAGAAGATTATACTTGCTCTAATTATTTGAGCGACCTCAATCGCCACAAGCAATTAATCATGGAGTGA 1371 0.4413 MGNQRKVFPSEEDVPASPRGVFEVPISGTYSDSTGSSNYNYSSGLSWMGPHKLHTKEGHHGQQWKTMIDTFKSVRRFSNIPLLAASYEISRRSLRNKLARIRPANEDDDYNLDAAIDLDAIATKPSWKNFGYAELVAATDDFNPENMIGKGGHAEVYKGRLPDGQVVAVKRLMKNEKEVEDRAGDFLTELGIIAHINHPNATRLIGFGIDRGLYFVLQLAPHGSLASLLFGSECLEWKIRFKVAIGVAKGLQYLHHDCPRRIIHRDIKASNILLNNNNEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKMVKEIADPRLTEQYDPTEMKCAMATASMCIHHMSSRRPYMNQVLQLLKGEEVAVELSQKSIAPRSLLLDACDLEDYTCSNYLSDLNRHKQLIME 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi381g00006 456 MobiDBLite consensus disorder prediction 1 20 - -
Gabi381g00006 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gabi381g00006 456 Pfam Protein kinase domain 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi381g00006 456 Gene3D Phosphorylase Kinase; domain 1 113 217 - -
Gabi381g00006 456 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Gabi381g00006 456 PANTHER OS08G0249100 PROTEIN 52 422 IPR046958 -
Gabi381g00006 456 SUPERFAMILY Protein kinase-like (PK-like) 127 415 IPR011009 -
Gabi381g00006 456 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 117 219 - -
Gabi381g00006 456 ProSiteProfiles Protein kinase domain profile. 142 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi381g00006 456 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 221 423 - -
Gabi381g00006 456 SMART serkin_6 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi381g00006 456 Gene3D Transferase(Phosphotransferase) domain 1 221 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi381g00006 Gabi-Chr381 146831 150582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi381g00006 104 432 Trihelix Transcription Factor Family AT5G38560 39.412 1.95e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi381g00006 Pkinase 7.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi381g00006 - - gmx:100812793 693.73