Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi381g00003 ATGGGTTCTTCAAAAGCTTGGTGGACAAACCCAAATTCTCAGGTACTGAACAAAAACCAAGAAGAGAACATGGCTGAACAACCTTCCATTTTCACAAGCTTGATGGGTTCACAGAATGAGAACCAACTAGAGGCGGTGCCGAAAGTTGAAGATTTCTTCGATAACCAAACGGAGACACATGATTCTTCTTCTCTGAGCCAAATATACGACCATGGTTCTGCCTCTTCTTACTTCAGCAACCATCAAGATCTGAAAGCAATTGCTGGGTTTCAAGCGTTTTCCACCACCAACTCGGGCTCCGAGGTGGATGACTCGGTCTCAAACACCAAAACTGCCGAGTTCGGTGCTCCCTCGGTTGAGTCTTCTAAGGGAACTTTGTCTATGGATGCTATCGCACAAAGTTCTGATAAGGCCATTGTTGTAGCAGGTTCTGATGCATCCGAGAAAATTGCTCATACCTTTGGCCAGCGAACTTCAATTTACAGAGGAGTCACAAGACACAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAAGTCAGGAAAGGGCGTCAAGTGTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTGAAGTACTGGGGACCAAATGCTACCACAAACTTTCCTGTTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATGTGGGAAAGCAAGAATTTGTTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCTAGGGGAGCTTCAATATACAGGGGTGTTACAAGGCATCACCAGCAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAAGATCTATACTTGGGAACATTTCCAACTGAAGAGGAAGCAGCAGAGGCATATGACATCGCAGCCATAAAGTTTAGAGGTGCAAATGCTGTAACAAATTTTGAGATGAGTAGATACAATGTGGAAGCTATATTGAAGAACTCTCTTCCAATTGGTGGGGGAGGAAAACGCTTGAAGCTTTCCCAAGAACCAGAGAAAGAACCTCCTATTATGAGTATTACCCAACAACCACAGTGTGCAAATGTGAGTAGCAGCATCAATTTCTCAACCATTCAGTCAGTTGATTCTATACCTTATGATTCTGCAACAGCATATTACCCCCACAACCTCTTCCACCATTTTCATCCTACCAACGTTGCTGGCAATAGCACAGCAGAGTCTGCTGCAGTTATGACCAATGCAACCACAATGACTGCACTGCCAGCACCAGCTGAGTTCTTCATATGGCCTCATCAGCCCTATTGA 1320 0.4485 MGSSKAWWTNPNSQVLNKNQEENMAEQPSIFTSLMGSQNENQLEAVPKVEDFFDNQTETHDSSSLSQIYDHGSASSYFSNHQDLKAIAGFQAFSTTNSGSEVDDSVSNTKTAEFGAPSVESSKGTLSMDAIAQSSDKAIVVAGSDASEKIAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQVRKGRQVYLGGYDKEEKAARAYDLAALKYWGPNATTNFPVSNYTKELEEMKHVGKQEFVASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFPTEEEAAEAYDIAAIKFRGANAVTNFEMSRYNVEAILKNSLPIGGGGKRLKLSQEPEKEPPIMSITQQPQCANVSSSINFSTIQSVDSIPYDSATAYYPHNLFHHFHPTNVAGNSTAESAAVMTNATTMTALPAPAEFFIWPHQPY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi381g00003 439 SMART rav1_2 160 232 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 SMART rav1_2 262 326 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 FunFam AP2-like ethylene-responsive transcription factor ANT 159 228 - -
Gabi381g00003 439 SUPERFAMILY DNA-binding domain 261 322 IPR016177 GO:0003677
Gabi381g00003 439 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 357 - -
Gabi381g00003 439 FunFam AP2-like ethylene-responsive transcription factor 261 322 - -
Gabi381g00003 439 Pfam AP2 domain 262 312 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 Pfam AP2 domain 160 218 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 ProSiteProfiles AP2/ERF domain profile. 160 226 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 CDD AP2 261 322 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 CDD AP2 159 228 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 Gene3D AP2/ERF domain 160 228 IPR036955 GO:0003700|GO:0006355
Gabi381g00003 439 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Gabi381g00003 439 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Gabi381g00003 439 SUPERFAMILY DNA-binding domain 159 228 IPR016177 GO:0003677
Gabi381g00003 439 ProSiteProfiles AP2/ERF domain profile. 262 320 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi381g00003 Gabi-Chr381 72444 76398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi381g00003 29 439 AP2-EREBP Transcription Factor Family AT5G10510 51.367 1.55e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi381g00003 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi381g00003 K09285 - gmx:100777168 555.058