Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3816g00004 ATGTCTGTCTCCTCAAACCACTCAACTCTTGACTTGTACTGCAGTGAGGCAATAACTAGCGATGTGGTTCACTTGGATTCTGATGCGGGTTTGAATGTTCTATTCGGGGAATCCGATGATGGTGATGAAAGCTATCTCTTGAGCTTATTAGACTCCGAACTTGATCATGTACAGATAAAAACAAAGACACTAGGACAACTTCGCAAAAAAACATGGCTGAGGAATGCTCGAGAAGAAGCCATAAATTGGATCCTAAAGGTGCATGCATACTACAGTTTTAGACCTGAGACAGCATATCTTTCTATAAATTATCTTGACCGTTTCCTTTTGTCACACACCTTGAAGCAAGAAAAAACGTGGCCTCTGCAGCTGTTGTCAGTTGCTTGCCTAGCATTGGCAGCAAAAATGGAAGAAACAAAAGTGCCACTTCTATTGGACCTTCAGATGATAGAGCCCGGGTTTCTGTTTAAGCCTAAAACAGTTCAAAGGATGGAGCTTTTGGTTATGGCCAGTCTCAAGTGGCGATTGCGCATTATAACCCCTTTTGATTTTGCCCATCTTTTCATTTCTAAGCTTTCATGCTCTGCTTCCACATTGGGAGACTTAAATTGTATTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTTTAGTAATGGATTTCTTAGAGTTTTCGCCGTCCACAATAGCAGCAGCTGCAGTGTTTTGGGTTACCAATCAACATGTTAATATCCAGAAATCAGGCTGCTTCCACAATAATATAAGCATTGAGATGGTGCAGAAATGTTACAACCTTATGAAGTTGAAACAGATCATTCGCCGATCAGAACACTTTTTGCCAAAGACACTACAATTAGTTCCCCCAAGTCCTACTTGTGTGCTTGATCATGCAGCTATGCTAGAGAGCATCGATGCTCACAAGCCCTGA 930 0.414 MSVSSNHSTLDLYCSEAITSDVVHLDSDAGLNVLFGESDDGDESYLLSLLDSELDHVQIKTKTLGQLRKKTWLRNAREEAINWILKVHAYYSFRPETAYLSINYLDRFLLSHTLKQEKTWPLQLLSVACLALAAKMEETKVPLLLDLQMIEPGFLFKPKTVQRMELLVMASLKWRLRIITPFDFAHLFISKLSCSASTLGDLNCIVSRVSDVIIRTCLVMDFLEFSPSTIAAAAVFWVTNQHVNIQKSGCFHNNISIEMVQKCYNLMKLKQIIRRSEHFLPKTLQLVPPSPTCVLDHAAMLESIDAHKP 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3816g00004 309 FunFam D6-type cyclin 60 174 - -
Gabi3816g00004 309 SMART Cyclin_C_2 179 290 IPR004367 -
Gabi3816g00004 309 Pfam Cyclin, C-terminal domain 179 268 IPR004367 -
Gabi3816g00004 309 SUPERFAMILY Cyclin-like 45 176 IPR036915 -
Gabi3816g00004 309 SMART cyclin_7 82 170 IPR013763 -
Gabi3816g00004 309 Gene3D - 59 263 - -
Gabi3816g00004 309 Pfam Cyclin, N-terminal domain 59 176 IPR006671 -
Gabi3816g00004 309 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Gabi3816g00004 309 PANTHER CYCLINS 70 268 IPR039361 -
Gabi3816g00004 309 Gene3D - 60 177 - -
Gabi3816g00004 309 FunFam D6-type cyclin 175 265 - -
Gabi3816g00004 309 CDD CYCLIN_AtCycD-like_rpt2 179 267 - -
Gabi3816g00004 309 SUPERFAMILY Cyclin-like 161 275 IPR036915 -
Gabi3816g00004 309 CDD CYCLIN_AtCycD-like_rpt1 76 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3816g00004 Gabi-Chr3816 54605 56052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3816g00004 1 272 Core Cell Cycle Gene Families AT1G70210 39.068 2.43e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3816g00004 K18810 - gmx:100799323 434.106