Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3815g00004 ATGACGGCCACGCTGAGAATCCTCCATTCCACAAACAGCGCCACGGCGGCGGTGCCGCCGGAGGCAATGCCGGTGGGTTCAGACTTCATCGTGATCCTAGCGGCCCTTCTCTGCGTCCTCGTATGTCTGGTGGGCCTCATCGCCATTGCCCGCTGCGCCTGGCTCCGCCGCCGAACTGTCAAAAGGTACGGCCACGGGTTCCACGTGACCTGCATAGACACTTGGCTTGGGTCCCACTCCTCGTGCCCCTCCTGTCGAGCCATATTAGCGGTGGCTAGGTGCCAGAAATGTGGCCAGTACCCGGCGGAGCCGCCACCGTAG 321 0.6355 MTATLRILHSTNSATAAVPPEAMPVGSDFIVILAALLCVLVCLVGLIAIARCAWLRRRTVKRYGHGFHVTCIDTWLGSHSSCPSCRAILAVARCQKCGQYPAEPPP 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3815g00004 106 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 64 98 - -
Gabi3815g00004 106 Pfam Ring finger domain 64 86 IPR001841 -
Gabi3815g00004 106 SUPERFAMILY RING/U-box 64 91 - -
Gabi3815g00004 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3815g00004 Gabi-Chr3815 33605 34058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3815g00004 58 97 C3H Transcription Factor Family AT1G20823 77.500 1.20e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3815g00004 - - csv:101214503 118.627