Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3815g00003 ATGGCAAATTGTTCCAAAAACACAAAATGGAAGTACCATGTTTTCTTGAGTTTTAGAGGAGAAGATACACGCTTAGGTTTCACTGATCACTTATATGCAGCCTTGGTGCGCAAGAGTCTAATAACATTCAGAGATAATGAAGAACTTGCAAGAGGTGAAGTCATCTCACAAAAACTCCTCATTGCAATTGAGGAATCTCTTTCTGCAGTTGTCATAATCTCCAAAAACTATGCTTCCTCATCTTGGTGTTTGGATGAGTTAGTTAAGATTCTTGAATCCAAACATGTGTTGGGACAAGAAGTGTTTCCAATCTTCTATGGTGTGGATCCCTCTGATGTAAGGAATCAAAGGGGTACTTTTGCAGAAGCTTTTAGGAAACATGAAAAAAAATTTGTACGAAACAAAGACAAGGTGCAAAAGTGGAGAGATGCATTAAAAGAAGTTGCTAACTTGTCAGGGTGGGACTCTAAGGATCAACATGAAACAAGACTCATTGGAGAAGTTGTAGCACAAGTATGGAAAAAACTGGAACCAAAATTCCCAACATATAATGATGGATTGGTTGGAATTGACACAAGATTAGAAGATTTGTATTCAACTCTGAAGCTAGAATTGGAGGATGTTCGTTTCATTGGGATATGGGGCATGGGTGGTATAGGAAAAACAACTCTCGCTGCTACTCTTTTCAAGAAAATCAGGAACCATTTTGATGTTAGTTGCTTTGTTGCCAATGTTAGAGAGGTGTCGGGGGAAAGAAACCAAGGTTTGCTACAGTTACAAGATAAAATTCTTTCTCATCTAAATATAAAAGGAATGGTAACTGAAACTTTAGGCCAAGGAAAGGACAGCTTAAGAAACATTTTATCCAACAAAAAGGTTCTACTTGTCCTTGATGATGTAAGTTCAAAAACCCAACTTGAGAATTTGGCTGGAAACCAAGAATGGTTTGGTCCAGGGAGTAGAATTATAGTCACAACTAGGGATAAGCACTTGTTGATATCCCATGGAGTATTGTTTGAAATGTATGAAAGTAAAATCTTAAATAATAATGAATCCCTTCAACTCTTTTGTGAGAAAGCATTTAAAGAAGCTGATCCTGAAGAGGATTATTTGTTGTTGTCTAAAAATGTAGTTGAATATGCTGGAGGTCTTCCCTTGGCTCTTGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTATATCTGATTGGGAAGATGCTTTGATTAAGATTAAACAAGTTCCACATGATGATATCCTAAAAAAACTTAGAATAAGTTATGACATGTTAGAAGATGAGCTCAAGACCATATTTCTAGATATTGCCTGTTTTTTTAAGGGATGGTACAAACATAAAGTGACACAACTATTGGACAATTGTGGCCTTCACGCAACTGTTGGATTAAATGTTCTTATAGAAAAATCACTTGTGACTTCCGATGGAAGAGTTATTGGGATGCATGATCTACTTGAAGAAATGGGTAAAACTATAGTTTTTCAGGAATCACCTAATGATCCTGGTAAACGGAGTAGATTGTGGTCTCTAGAGGATGTTGATGAAGTGCTGAGAAAAAATAAGGGAACTGAAATTGTCCAAGGTATAGTTCTGAAGCCTGCACCATCTAAGCCATATGAAGCTTTACATTGGGACCCTGAGGCTTTCTCAAAAATGTGTAATCTCAGACTACTAGTTGTATTACGTAATTTGCATCTACCCTTTGGTCTCAAATGTCTTTCTAGCTCACTAAAAGTTCTTGTATGGTGCGGATATCCATTGAATGCTCTACCACTTGGAGTTCAACTAGATAAGCTTGTTCACCTACAAATGAACAACAGCAAAGTTAAGCAACTATGGAATGGAACTCAGTATGTTAGAAAGCTGAAAATAATTAATCTGAATAATTGCAAAGATCTACGTCAAACTCCAGATTTTTCTGGAGCGCCATATCTTGAAGAGTTGTATCTGAATGATTGTACAAAACTTGCTGAAGTTCACCATTCAATTGGACAACACAAAAAGCTCCAGATATTGAGCTTGATAGGATGTGTAAACCTTAAAACCTTTCCAAGTAAATTGGAAATGTGTTCCCTGAAAACGTTCTTGCTTTCTGATTGTTCAAACATTGAGAGACTTCCAGATATGGGGGAAAACATGACATGCCTCTCTGTCCTTAACTTAATGAATTGTGATAAAATATTTTGCCTCCCAAACAGCATTAGTAACTTGAAGTCTCTCAAGACTCTCAACATATCAGGATGCTCAAAAGTTTGTTCCCTACCAGACAATATAAACCAAAACAAGGCTTTGGAGGATCTTGACTTGAGTGGAACTGCTATTAGAGAATTGCATCCATCCCTACTTCAGTTACACAATCTCAAAAGGTTATCTTTCAGGGAATGTAGTAAACCAACATGCTTAACATTGCCTCCTTTTGTCTCAGGTCTTTCCTCATTAACTGTTTTGGATTTGAGCTATTGCAATCTCACTGATCAGTCAATTCCTTCTGATCTTCATTGCTTATCATCATTGGAGAGACTAATTTTGAGTGGCAACAATTTTATCCATTTCCCTGATCATTTCATTGCTAATATTCCAAAGCTTCGTTGCCTTGAATTGGAAGATTGTTCACAGCTTCAATCGTTGCCAGTGCTTCCACCACATGTGCGCTTGTATGTAACAGATTTAGCTGAGAGGGAAGCTAAACAGTTAGATGAAGAAAAGCTATGGAAGTTGTTTGAATCAAGTGACAAAGAGCTCTTTCAGTCACCTGTATATCGCATGTTTGATTATGATGATCCTATGTACGTGGAACTCCCACCACGGTCAGATAATCAGAAATTTTTACCCTTGAGCTCATCATATGCGTCAGAAAGTGATTCATTTGCATCAGTAACAATGGAAGTTCCTGATGATTGTCGTTCAAGTGATTGGTGGGGAGTTGTTGTATTTTTTGCCTTAGAAGCTCCTGAATTTACTACGGACAATCCCATGCTTCTTATTTGGAGCTTTGAGTCTCAGGATCCTGCAGATGGAACCTCCTTATTTTTGGTCGCAGTTTCAACAGAAAGTAAAGAACTTCACATGTTAACAATGATCGTGAGTGGTGATTATATATACATTCGGAGACACCAAATTGGGAACAGCGAGCTCAATGGGCGTCCCTTTAGCAAGCATCCAAAGAGAGAGTTGAGGGAAATCAGAATGCTGCGTTTTGAAGTTGTAACCCCTGGCTGCAAGATAAGGAAGTGTAGGTGGCGTGTGTTGCGCAAGGAAGATAGTCTTCAAGAATTGCAAATGTTGTACAACAGCAAACTTTTTGAGACACCTTCTGATTCTGAGCATTCAAGTGGTATGAGCAAATCAACTATGGATGAATCTGAGGGAGTGGAAGCTACTGCTTCTGATGAGCATAACATTGAAAAACCTGATGAGAACTTGTTGGGAAAAATGTTTCACCATATTAGACAAGGAGTGGGTTTAAGCGCGCTAGCTTTGATGTCAATGATGATAGGTGCTACACTATACCTTTCGCCTAAGCAAGGCTTTAAACTGCACAGCCCAACAAATGAGGCCACAACTAAACTATTAAAATCACGTTATGGAATCGGAATTAAGGTCAATAAACCGCAATTTCTACGCAAACATAACACAAATGCAAGCCAGCGATTGTCATTTTCAGCACATCAGCCACCAAGGAGGTTGAGTTTCTATCGGTTATTTAACTAG 3723 0.382 MANCSKNTKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSLITFRDNEELARGEVISQKLLIAIEESLSAVVIISKNYASSSWCLDELVKILESKHVLGQEVFPIFYGVDPSDVRNQRGTFAEAFRKHEKKFVRNKDKVQKWRDALKEVANLSGWDSKDQHETRLIGEVVAQVWKKLEPKFPTYNDGLVGIDTRLEDLYSTLKLELEDVRFIGIWGMGGIGKTTLAATLFKKIRNHFDVSCFVANVREVSGERNQGLLQLQDKILSHLNIKGMVTETLGQGKDSLRNILSNKKVLLVLDDVSSKTQLENLAGNQEWFGPGSRIIVTTRDKHLLISHGVLFEMYESKILNNNESLQLFCEKAFKEADPEEDYLLLSKNVVEYAGGLPLALEVLGSFLCGRSISDWEDALIKIKQVPHDDILKKLRISYDMLEDELKTIFLDIACFFKGWYKHKVTQLLDNCGLHATVGLNVLIEKSLVTSDGRVIGMHDLLEEMGKTIVFQESPNDPGKRSRLWSLEDVDEVLRKNKGTEIVQGIVLKPAPSKPYEALHWDPEAFSKMCNLRLLVVLRNLHLPFGLKCLSSSLKVLVWCGYPLNALPLGVQLDKLVHLQMNNSKVKQLWNGTQYVRKLKIINLNNCKDLRQTPDFSGAPYLEELYLNDCTKLAEVHHSIGQHKKLQILSLIGCVNLKTFPSKLEMCSLKTFLLSDCSNIERLPDMGENMTCLSVLNLMNCDKIFCLPNSISNLKSLKTLNISGCSKVCSLPDNINQNKALEDLDLSGTAIRELHPSLLQLHNLKRLSFRECSKPTCLTLPPFVSGLSSLTVLDLSYCNLTDQSIPSDLHCLSSLERLILSGNNFIHFPDHFIANIPKLRCLELEDCSQLQSLPVLPPHVRLYVTDLAEREAKQLDEEKLWKLFESSDKELFQSPVYRMFDYDDPMYVELPPRSDNQKFLPLSSSYASESDSFASVTMEVPDDCRSSDWWGVVVFFALEAPEFTTDNPMLLIWSFESQDPADGTSLFLVAVSTESKELHMLTMIVSGDYIYIRRHQIGNSELNGRPFSKHPKRELREIRMLRFEVVTPGCKIRKCRWRVLRKEDSLQELQMLYNSKLFETPSDSEHSSGMSKSTMDESEGVEATASDEHNIEKPDENLLGKMFHHIRQGVGLSALALMSMMIGATLYLSPKQGFKLHSPTNEATTKLLKSRYGIGIKVNKPQFLRKHNTNASQRLSFSAHQPPRRLSFYRLFN 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3815g00003 1240 Gene3D Ribonuclease Inhibitor 544 693 IPR032675 -
Gabi3815g00003 1240 Gene3D Ribonuclease Inhibitor 694 906 IPR032675 -
Gabi3815g00003 1240 SMART LRR_typ_2 839 862 IPR003591 -
Gabi3815g00003 1240 SMART LRR_typ_2 814 838 IPR003591 -
Gabi3815g00003 1240 SMART LRR_typ_2 766 788 IPR003591 -
Gabi3815g00003 1240 SUPERFAMILY L domain-like 545 894 - -
Gabi3815g00003 1240 Gene3D - 5 176 IPR035897 -
Gabi3815g00003 1240 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 696 IPR044974 GO:0006952
Gabi3815g00003 1240 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Gabi3815g00003 1240 SMART till_3 11 151 IPR000157 GO:0007165
Gabi3815g00003 1240 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Gabi3815g00003 1240 FunFam Disease resistance protein (TIR-NBS-LRR class) 348 430 - -
Gabi3815g00003 1240 Gene3D - 177 337 IPR027417 -
Gabi3815g00003 1240 Pfam NB-ARC domain 196 427 IPR002182 GO:0043531
Gabi3815g00003 1240 Gene3D - 346 430 IPR042197 -
Gabi3815g00003 1240 MobiDBLite consensus disorder prediction 1107 1127 - -
Gabi3815g00003 1240 MobiDBLite consensus disorder prediction 1107 1139 - -
Gabi3815g00003 1240 Pfam TIR domain 11 185 IPR000157 GO:0007165
Gabi3815g00003 1240 PRINTS Disease resistance protein signature 381 395 - -
Gabi3815g00003 1240 PRINTS Disease resistance protein signature 210 225 - -
Gabi3815g00003 1240 PRINTS Disease resistance protein signature 287 301 - -
Gabi3815g00003 1240 PRINTS Disease resistance protein signature 739 755 - -
Gabi3815g00003 1240 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Gabi3815g00003 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Gabi3815g00003 1240 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3815g00003 Gabi-Chr3815 14344 19743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3815g00003 12 796 WRKY Transcription Factor Family AT4G12020 32.039 1.39e-95 336