LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3814g00001	ATGGCCGCAGCAAAGAACAGTGGCAAGGAGGGTGTTCATGAAACTCACAATGTTATTGGTGAAAGTGAAAGCCAAGATTGGGAGATTGAAAAAGGAAAGGGTCTTGGTTTCAGCTCAGGGAGACAGCAATGGAGGAAGCAAGTTTTTGATGAAGTTTCCACCTCACACAAACGCCAAAACCGAAACCAATCATCCTCTGTTCAATCTCCGCAACCTTTTTCCTCTTACTCTTATCCTCCTTCATCAAAAATAGTGTTTCCTTTTGCTTTTGAAGGGTCTCAACATCCAATGCCATTCCCACACCAATTTGGAACCACAAATTCACCTCTTTCTCGTCCACCTATTCAACAAACACAACAAACCCAGCAACAAATGATATCTTTTGGGGACCAACAGAACATGGGGTATGCACCATTCATAGCCCCACAACAACAACACCTTCAGCAGCAGCAACAACATCAACATCAGCTTCTTCAATATTGGAATGATGCACTGAATCTAAGTCCAAGAGGAAGGATGATGATGATGAACAAGTTAGGAACAGATGGGAGACCAATGTTTAGGCCTCCAACACAACCTTTGAATACTACCAAGCTCTACAGAGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAGATTCGTCTTCCTCGTAATAGGACTCGCCTCTGGCTTGGCACATTTGACACTGCTGAAGATGCTGCCATGGCATATGATCGTGAAGCTTTCAAGCTCAGAGGAGAGAATGCTAAGCTCAATTTTCCCGAGCTTTTCCTTAAGAAGGATAAGCCATCATCATCCACAACAGCTCCAACTTCTTCTGCAGCTGATTCTTCTCCTCATGAAGTTTCAACATCAAGCCAGAACATTAAGCAACCTGAACCAATTCCTGAAGACCATAACATGCTGCAAGCTATGAACACTGAGAGCTTGCCACCACCAACACCATTAACAGAAGAGAATGCTAACAATGGTGCTGAAACTGGGGAAAGCATTTCACAGTCTCAGGAATTGGTTTGGGGAGAAATGGCTGCTTGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGTAGCCCTGTGTGGGATGATTTGGACACAAACAATAATCTTCTCTTGCAGTCACATCTTCCTTTTGTGAATCCAAATCAACAAGAATTCCATGATGTTGATGCTGCTCATAGTCAAGAAGATAACACAGGACCAGGTTCTTCCTCTTCCTCTTGTCCCATGAGGCCCTTCTTTTGA	1248	0.4447	MAAAKNSGKEGVHETHNVIGESESQDWEIEKGKGLGFSSGRQQWRKQVFDEVSTSHKRQNRNQSSSVQSPQPFSSYSYPPSSKIVFPFAFEGSQHPMPFPHQFGTTNSPLSRPPIQQTQQTQQQMISFGDQQNMGYAPFIAPQQQHLQQQQQHQHQLLQYWNDALNLSPRGRMMMMNKLGTDGRPMFRPPTQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLKKDKPSSSTTAPTSSAADSSPHEVSTSSQNIKQPEPIPEDHNMLQAMNTESLPPPTPLTEENANNGAETGESISQSQELVWGEMAAWFNAIPAGWGPGSPVWDDLDTNNNLLLQSHLPFVNPNQQEFHDVDAAHSQEDNTGPGSSSSSCPMRPFF	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3814g00001	415	CDD	AP2	198	258	IPR001471	GO:0003700\|GO:0006355
	Gabi3814g00001	415	PRINTS	Ethylene responsive element binding protein signature	222	238	IPR001471	GO:0003700\|GO:0006355
	Gabi3814g00001	415	PRINTS	Ethylene responsive element binding protein signature	200	211	IPR001471	GO:0003700\|GO:0006355
	Gabi3814g00001	415	Gene3D	AP2/ERF domain	199	257	IPR036955	GO:0003700\|GO:0006355
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	385	415	-	-
	Gabi3814g00001	415	Pfam	AP2 domain	200	248	IPR001471	GO:0003700\|GO:0006355
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	9	30	-	-
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	58	75	-	-
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	263	295	-	-
	Gabi3814g00001	415	FunFam	Ethylene-responsive transcription factor 2	198	257	-	-
	Gabi3814g00001	415	SMART	rav1_2	199	262	IPR001471	GO:0003700\|GO:0006355
	Gabi3814g00001	415	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	28	365	-	-
	Gabi3814g00001	415	SUPERFAMILY	DNA-binding domain	199	257	IPR016177	GO:0003677
	Gabi3814g00001	415	ProSiteProfiles	AP2/ERF domain profile.	199	256	IPR001471	GO:0003700\|GO:0006355
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	1	75	-	-
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	397	415	-	-
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	262	334	-	-
	Gabi3814g00001	415	MobiDBLite	consensus disorder prediction	304	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3814g00001	Gabi-Chr3814	46150	48407	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3814g00001	1	400	AP2-EREBP Transcription Factor Family	AT2G20880	40.385	5.89e-64	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Gabi3814g00001		AP2	2.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3814g00001	-		-	gmx:100811328	497.278