Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3811g00001 ATGGAGGCCAGGACTATTGTTGAGAGGAAGAGAACATTGATTGAGAAGGTGAGAAAGAATAGCACAGTTGAAGAAGAAGTGGAAAATGAAGTAGAAGAGGAGGATGAAAGTGGTGTTGGTGATGTTGGTGTTACAGAAGAAGAGAAGAAGAAAGTTGGTGGTGGGAGAAGAGGGTCAAGTGGTGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGAGCTGATTTGACTGATGCTAAGAGATACCATCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCTCCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTTCATGACCTGGGGGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCGGACACAATGAACGGCGCCGGAAAACCAACCCAGAAGCTAGCAATGAGGGCAGCAGCAGCCACAACAAAGGCCATCACCCCAAGGAAACTCACTGCAGGCTTGCTGATGAGAGGGGAAGGATTCAGACAAACATACCAGGGAGTTCTGGCTATAAATCTTTCAATATCAGATGA 582 0.4897 MEARTIVERKRTLIEKVRKNSTVEEEVENEVEEEDESGVGDVGVTEEEKKKVGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKTNPEASNEGSSSHNKGHHPKETHCRLADERGRIQTNIPGSSGYKSFNIR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3811g00001 193 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
Gabi3811g00001 193 MobiDBLite consensus disorder prediction 18 72 - -
Gabi3811g00001 193 Pfam SBP domain 71 144 IPR004333 GO:0003677
Gabi3811g00001 193 SUPERFAMILY SBT domain 69 148 IPR036893 GO:0003677|GO:0005634
Gabi3811g00001 193 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 158 IPR044817 GO:0003677
Gabi3811g00001 193 MobiDBLite consensus disorder prediction 178 193 - -
Gabi3811g00001 193 FunFam Squamosa promoter-binding-like protein 14 63 132 - -
Gabi3811g00001 193 MobiDBLite consensus disorder prediction 26 41 - -
Gabi3811g00001 193 MobiDBLite consensus disorder prediction 155 174 - -
Gabi3811g00001 193 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Gabi3811g00001 193 MobiDBLite consensus disorder prediction 135 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3811g00001 Gabi-Chr3811 9285 10885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3811g00001 7 193 SBP-box Gene Family AT3G15270 46.809 3.96e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3811g00001 SBP 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3811g00001 - - gmx:100787416 253.832