Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi380g00009 ATGGGTGGTCGTCTATCGGAGTCGAAGTTGCTCAAAGACTTGGTTCTGTACGCGGCTAGCACAGCACTGAGTTGCTTGGTGTTGTTCGTGGGGCTCCGACAACTTGACCCGAACCGCGAGGCATCAAAGAAAGCCCTTCAGCACAAAAAGGATATATCCAAACGCCTCGGTCGTCCCCTCCTTCAAACAAACCCTTACGAGGATGTGATAGCCTGTGATGTTATTAATCCTGATGACATTGATGTTGAGTTTAACTCTATTGGGGGACTTGAAAGAATAAAGCAAGCTTTGATTGAGCTTGTGATTTTGCCTCTGAAAAGACCAGAGTTGTTTTCTCATGGAAAGCTTCTTGGACCACAAAAGGGGATTCTGTTGTATGGACCACCTGGTACTGGCAAGACCATGCTTGCCAAAGCTATTGCTAAAGAGTGTGGTGCTGTTTTTATTAATGTCAAGATATCAAACCTCATGAGCAAGTGGTTTGGTGATGCCCAGAAGCTTGTGGCTGCCGTTTTCAGCCTAGCTGATAAGCTCCAGCCTTCTATCATATTCATTGATGAAGTTGACAGTTTTTTGGGTCAACGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTTATGGCTTTATGGGATGGATTCACTACAGATCAGAATGCCCAAGTTATGGTACTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATCGGAATTCCAGACCAAAGGGAGAGGGCTGACATATTGAAGGTTATATTGAAGGGCGAGAGGGTTGAAGAAAACATTGACTGTAACCATATAGCTGGCCTATGTGAGGGTTACACTGGTTCAGATCTATATGATCTCTGCAAGAAGGCTGCCTATTTTCCAGTTAGAGAACTGCTGGATGAAGAGGAGAAAGGGAAAAGATCTTATGCACCTAGACCATTGTCACAGTCAGATTTGGAGAGGGCCTTTGCCACTTCACGGAAGACAAAGATTGCTGCAAGTGAATACAGTGGATCAAGCACAGGGACACCAAGATGGACAGGGAACAGGGAATCAGGTGATTATGAGGTTCAAGCTGCAATAAGTGAACTCTCTAAGTTTGTGCTGTCTCACATGATTAACCGCCAACCAGATGCCGAGGATCTTTAA 1179 0.447 MGGRLSESKLLKDLVLYAASTALSCLVLFVGLRQLDPNREASKKALQHKKDISKRLGRPLLQTNPYEDVIACDVINPDDIDVEFNSIGGLERIKQALIELVILPLKRPELFSHGKLLGPQKGILLYGPPGTGKTMLAKAIAKECGAVFINVKISNLMSKWFGDAQKLVAAVFSLADKLQPSIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERADILKVILKGERVEENIDCNHIAGLCEGYTGSDLYDLCKKAAYFPVRELLDEEEKGKRSYAPRPLSQSDLERAFATSRKTKIAASEYSGSSTGTPRWTGNRESGDYEVQAAISELSKFVLSHMINRQPDAEDL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi380g00009 392 FunFam ATPase family AAA domain-containing protein 1 81 258 - -
Gabi380g00009 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 31 351 - -
Gabi380g00009 392 MobiDBLite consensus disorder prediction 343 362 - -
Gabi380g00009 392 Pfam AAA+ lid domain 275 311 IPR041569 -
Gabi380g00009 392 Gene3D - 81 339 IPR027417 -
Gabi380g00009 392 SMART AAA_5 119 255 IPR003593 GO:0016887
Gabi380g00009 392 ProSitePatterns AAA-protein family signature. 225 244 IPR003960 GO:0005524|GO:0016887
Gabi380g00009 392 MobiDBLite consensus disorder prediction 343 358 - -
Gabi380g00009 392 CDD RecA-like_ATAD1 86 251 - -
Gabi380g00009 392 Gene3D - 254 334 - -
Gabi380g00009 392 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Gabi380g00009 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 315 IPR027417 -
Gabi380g00009 392 Pfam ATPase family associated with various cellular activities (AAA) 123 252 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi380g00009 Gabi-Chr380 92572 95918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi380g00009 82 317 Calmodulin-binding Proteins AT3G56690 35.537 7.35e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi380g00009 K22530 - gmx:100791694 665.225