Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3808g00004 ATGTCTTCACCAGAACCAGATACTCCTGAAACCCCACCACCTATAACATACAGCACCCCACCAGCCCTTATAGCCTTTACACTCGCTGTGGTTGTTGTTTGCTTTATATGTTTCACCATTGTATATTTCTGCAGGTGTTGTTTTGTTGGCATTTTTCAAAATTGGGCATTTCAACGATCAACCTCAGGCACCCTTGTTAATATTTCTCCCAATGTATCTCCTTATAGAGGCCTCGATCCTTCTCTGCTACAAGCCTTCCCAACCTTTCTCTATGCCTCCGTTAAGGATCTTCGCAAAGAGAAGTATAGCCTCGAATGCGCCATTTGCTTGTTGGAGTTCGAAGAAGATAGCATGATGCGGTTGTTGACCGTTTGTTGCCATGTCTTCCATCAAGAATGCATTGATCTCTGGCTTAGTTCACACAAGACATGCCCTGTTTGTCGTACGGATCTTGATTCACCAACCAACGAAACGCGAAAATCTCATGAACTCGGCGAGGACTATCTTCATGCAGAGGAAGAGAGAAGGAATGATGTGTGTATTGATGTAAAAGAAGGGGAAGATGATCAAAGACACGATGATGAGCATGTTTCAATGAGTATGATGAACTTGCAACGGGCACACTCAACGGGGCATTCCATAGTTATGATTAGAGGAGGAGATAATAATGGAGGAAAAAGTGATGATAAATATACGTTGAGATTGCCGGAACATGTAGCGGTGAAAATTGTAAGAAGAGGTCATAACTACACCAAGAGTTGTTCAAGTTACAATGAGATGACAAGGCCTGTTGCACCTTGTAGTAATTGTGGTTATGTTCAAACTGTAATTGGTTCCTCTTCACGTAGCGGTACACAAAATATTTAA 867 0.4221 MSSPEPDTPETPPPITYSTPPALIAFTLAVVVVCFICFTIVYFCRCCFVGIFQNWAFQRSTSGTLVNISPNVSPYRGLDPSLLQAFPTFLYASVKDLRKEKYSLECAICLLEFEEDSMMRLLTVCCHVFHQECIDLWLSSHKTCPVCRTDLDSPTNETRKSHELGEDYLHAEEERRNDVCIDVKEGEDDQRHDDEHVSMSMMNLQRAHSTGHSIVMIRGGDNNGGKSDDKYTLRLPEHVAVKIVRRGHNYTKSCSSYNEMTRPVAPCSNCGYVQTVIGSSSRSGTQNI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3808g00004 288 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Gabi3808g00004 288 SMART ring_2 106 147 IPR001841 -
Gabi3808g00004 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 155 IPR013083 -
Gabi3808g00004 288 Pfam Ring finger domain 105 148 IPR001841 -
Gabi3808g00004 288 FunFam E3 ubiquitin-protein ligase ATL6 68 154 - -
Gabi3808g00004 288 SUPERFAMILY RING/U-box 92 156 - -
Gabi3808g00004 288 PANTHER RING FINGER DOMAIN-CONTAINING 9 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3808g00004 Gabi-Chr3808 51046 51912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3808g00004 19 245 Rapid Response to Elicitors AT3G05200 34.746 1.06e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3808g00004 - - ccaj:109800443 357.066