Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3808g00003 ATGATGGATTATAGCCGAGACGGAAACGTTGTTCAGATAATCGCCGGCGAGAACTGGTCATCTTCCGGCGCCGGCGACCAATTGGTCTGGGCGACGGAAGACGATTACAGATTCTGGAACAACAACGGCGGCGACGGCGACGGCGCTCCCTCGAACTCAAACAACAGCTACGATCAGAGGCAATCGAAGAAATCGAGGACCTCGCAGGACGCAACGACGTTGTCTTCTTCGTCCAACAACAAGTCGAAGACTATTGGGAAGATGTTCTTCAAGACGAAGCTATGTTGCAAGTTCCGTGCGGGCACGTGCCCTTACGTCACCAACTGCAACTTCGCCCATAGCATCGACGAGCTGCGGCGGCCGCCACCCAATTGGCAGGAAATCGTGGCGGCGAACGAGGAGGAACAGCCACCGCCCATGGAGGAATTTCAGATTCCGTCTGTGGGGTTTTCCGCGGAGACGCAGAGGTCGTATAAGGGTCGACATTGCAAGAAGTTTTACACTGAGGAAGGGTGCCCCTATGGGGATAGTTGCACGTTTCTTCATGATGAACAATCCAAGAATCGAGAGAGCGTCGCTATAAGCTTAGGCCCTGGTGGGTATGGAGGAGGTGGTGGTGGTGGTGGTGCAGTTGGAGGTGGTAGTGGTGGTTCTGCTGTTGGGAGTGGACCCAATTCCAAGCCTTCGAATTGGAAGACGAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGTCCATTCGGGAGCAAGTGTCATTTTGCTCATGGTGCTGCAGAATTGCACCGATATGGAGGTGGGCTAATGGAGGGAGAAAATAGAGACACTGCCGCTGCTGACACGATACAGGGAGGAATGCCTTCAAAAACTCCTGCTGATAATGTGGTTGCATCAGTTACGCCAGTTGCTCATTCTGATGTTTATCATATTGGAGTTCCTTTACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 1050 0.5133 MMDYSRDGNVVQIIAGENWSSSGAGDQLVWATEDDYRFWNNNGGDGDGAPSNSNNSYDQRQSKKSRTSQDATTLSSSSNNKSKTIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIDELRRPPPNWQEIVAANEEEQPPPMEEFQIPSVGFSAETQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGAVGGGSGGSAVGSGPNSKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHRYGGGLMEGENRDTAAADTIQGGMPSKTPADNVVASVTPVAHSDVYHIGVPLQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3808g00003 349 MobiDBLite consensus disorder prediction 40 80 - -
Gabi3808g00003 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 256 IPR000571 GO:0046872
Gabi3808g00003 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Gabi3808g00003 349 SUPERFAMILY CCCH zinc finger 156 185 IPR036855 GO:0046872
Gabi3808g00003 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 216 286 IPR045877 GO:0003729
Gabi3808g00003 349 SUPERFAMILY CCCH zinc finger 228 261 IPR036855 GO:0046872
Gabi3808g00003 349 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Gabi3808g00003 349 FunFam Zinc finger, CCCH-type 151 189 - -
Gabi3808g00003 349 Pfam CCCH-type zinc finger 161 183 IPR041367 -
Gabi3808g00003 349 SUPERFAMILY CCCH zinc finger 87 120 IPR036855 GO:0046872
Gabi3808g00003 349 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Gabi3808g00003 349 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Gabi3808g00003 349 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Gabi3808g00003 349 SMART c3hfinal6 157 184 IPR000571 GO:0046872
Gabi3808g00003 349 MobiDBLite consensus disorder prediction 45 80 - -
Gabi3808g00003 349 FunFam Zinc finger CCCH domain-containing protein 85 121 - -
Gabi3808g00003 349 Gene3D - 150 196 - -
Gabi3808g00003 349 Gene3D - 224 262 - -
Gabi3808g00003 349 Gene3D - 83 120 - -
Gabi3808g00003 349 FunFam zinc finger CCCH domain-containing protein 15-like 224 263 - -
Gabi3808g00003 349 ProSiteProfiles Zinc finger C3H1-type profile. 157 185 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3808g00003 Gabi-Chr3808 46682 50132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3808g00003 232 260 C3H Transcription Factor Family AT1G68200 62.069 4.23e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3808g00003 zf-CCCH 7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3808g00003 - - pcin:129284509 526.939