Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3807g00050 ATGTCAGATGACATGCTGATGCATTTCTCGTCCAACTCTTCCAACCAATCGGATCAGTCACTTCCTACAAAGATTGCAAAGCTGGAAGCTCGCATGGTGGGTAAGGCTTCTTCCACTGCTGCTCAGCAGTCAGGTTGGCCCTCTCTTCCTTCAGCTGCCAAATTTGGAGGAGCTGCTGCTGAAGATTTGGCTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTCTTAATACAAGCCAACACACAGAAGCGCTTAAAACTTCAAGAACATGATAACTCTAATGTTTTTGAACATGTTGAGGTTGCTACTGATGGAAGACAAACTAGTTTGGAGGCTGTGGAGACAAAAACTAATTTTGATGTGAATAGAAAGAAACACGGTCGTGGAAGAGCGAGTTCTGGTTCAGGTAGGGGCCGCGGTTCCAGAGTTAATGATCAGACCAGAATACAAATTTCTCCTCCAACTGTTTTGGCTTCAAATGGTCAGATTGAGAATGCATACCATAAAGATGGCAGACTCAAAGATCAGTTTCATAATGATAACTGTGCTACATTAGAGGAGGAGGTTGCATCTCTACATGCTAAAGTTGTTGCATTGGAGGAGGAATTGCGTAAATCAAAGCAAGAGACCTCTGATTATCAGAACCTTTGTCGACAGTTAGAAAAGGAACTGAAGGACCTGACAGATCATGAACAGCAAATGAAACCTAAGAGAACAAAAATAATATCGGATTTGTTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTTAAAGTACGACAAGACTCATTGAGACTTGGAAATGTTGGTGTAATCAGAGCTGGAACCATCTTATCTGAGACCTGGGAAGATGGTCAAGCATTAAAGGATCTGAATACCCAGCTTAGGCAACTAGTAGAAACAAAGGAGGCAATTGAACGGCAGCGCAAATTGTTTAAGAAAAAACAATCTGACAAGGGTGATGGAACAGAAACAGAGGCTGGATTACCGGAAGATGTTCTCATTCATGATGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGAGAAGAAGAAATTATTTTGCGGGAGAGGGATCGCTATGAACTTGAGAAGGGGAGGTTGATACGTGAAATGAAACGCATACGGGATGAAGATGGCTCACGGTTTAACAACTTTCAGATTCTAAATCATCGCTATGCCCTTCTAAACCTTCTTGGGAAGGGAGGGTTCAGTGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATACGGCATGCCATTCGGGAGTATAATATTCACAAGACCCTGGTGCATCGTCACATTGTTCGTTTATGGGACATCTTTGAGATTGATCAAAATACATTCTGCACTGTTCTAGAGTACTGTAGTGGGAAGGATCTTGATGCTGTCCTTAAAGCAACACCTATATTGCCTGAGAGGGAGGCCAGGGTCATTCTAGTTCAGATTTTTCAAGGCCTTATTTATATGAATAAAAGAACACAGAAGATTATACATTATGATTTAAAGCCTGGAAATGTTCTGTTTGACGAGCTTGGTATTGCCAAAGTGACTGATTTTGGTCTTAGCAAAATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTGATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTCTATCAAATGCTCTTTGGCAGACGTCCTTTCGGGCATGACCAAACACAGGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACGCAAGGTTGAATTTCCTTCTAGACCTACTGTTTCTAATGAGGCAAAGGATTTTATCCGGCGGTGTCTAACATATAACCAGGCTGAGAGACCAGATGTATTAACCATTGCTCAAGATCCATATCTCACTTACTCAAAGAAGTAA 2037 0.4192 MSDDMLMHFSSNSSNQSDQSLPTKIAKLEARMVGKASSTAAQQSGWPSLPSAAKFGGAAAEDLAEPSTSSDSDDDNGGEFLIQANTQKRLKLQEHDNSNVFEHVEVATDGRQTSLEAVETKTNFDVNRKKHGRGRASSGSGRGRGSRVNDQTRIQISPPTVLASNGQIENAYHKDGRLKDQFHNDNCATLEEEVASLHAKVVALEEELRKSKQETSDYQNLCRQLEKELKDLTDHEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTILSETWEDGQALKDLNTQLRQLVETKEAIERQRKLFKKKQSDKGDGTETEAGLPEDVLIHDEIYKSRLASIKREEEIILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTYSKK 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3807g00050 678 MobiDBLite consensus disorder prediction 122 149 - -
Gabi3807g00050 678 ProSitePatterns Protein kinases ATP-binding region signature. 406 429 IPR017441 GO:0005524
Gabi3807g00050 678 FunFam Serine/threonine-protein kinase TOUSLED 391 678 - -
Gabi3807g00050 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Gabi3807g00050 678 Coils Coil 295 322 - -
Gabi3807g00050 678 Gene3D Transferase(Phosphotransferase) domain 1 391 678 - -
Gabi3807g00050 678 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3807g00050 678 SMART serkin_6 400 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00050 678 Coils Coil 187 238 - -
Gabi3807g00050 678 MobiDBLite consensus disorder prediction 1 79 - -
Gabi3807g00050 678 SUPERFAMILY Protein kinase-like (PK-like) 392 674 IPR011009 -
Gabi3807g00050 678 ProSiteProfiles Protein kinase domain profile. 400 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00050 678 Pfam Protein kinase domain 401 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00050 678 CDD STKc_TLK 399 672 - -
Gabi3807g00050 678 PANTHER MIXED LINEAGE PROTEIN KINASE 10 677 - -
Gabi3807g00050 678 Coils Coil 351 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3807g00050 Gabi-Chr3807 483999 495104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3807g00050 383 678 MAP Kinase Kinase Kinase AT3G13530 27.090 1.51e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Gabi3807g00050 Pkinase 1e-59 CL0016