Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3807g00049 ATGTCAGATGACATGCTGATGCATTTCTCGTCCAACTCTTCCAACCAATCGGATCAGTCACTTCCTACAAAGATTGCAAAGCTGGAAGCTCGCATGGTGGGTAAGGCTTCTTCCACTGCTGCTCAGCAGTCAGGTTGGCCCTCTCTTCCTTCAGCTGCCAAATTTGGAGGAGCTGCTGCTGAAGATTTGGCTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTCTTAATACAAGCCAACACACAGAAGCGCTTAAAACTTCAAGAACATGATAACTCTAATGTTTTTGAACATGTTGAGGTTGCTACTGATGGAAGACAAACTAGTTTGGAGGCTGTGGAGACAAAAACTAATTTTGATGTGAATAGAAAGAAACACGGTCGTGGAAGAGCGAGTTCTGGTTCAGGTAGGGGCCGCGGTTCCAGAGTTAATGATCAGACCAGAATACAAATTTCTCCTCCAACTGTTTTGGCTTCAAATGGTCAGATTGAGAATGCATACCATAAAGATGGCAGACTCAAAGATCAGTTTCATAATGATAACTGTGCTACATTAGAGGAGGAGGTTGCATCTCTACATGCTAAAGTTGTTGCATTGGAGGAGGAATTGCGTAAATCAAAGCAAGAGACCTCTGATTATCAGAACCTTTGTCGACAGTTAGAAAAGGAACTGAAGGACCTGACAGATCATGAACAGCAAATGAAACCTAAGAGAACAAAAATAATATCGGATTTGTTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTTAAAGTACGACAAGACTCATTGAGACTTGGAAATGTTGGTGTAATCAGAGCTGGAACCATCTTATCTGAGACCTGGGAAGATGGTCAAGCATTAAAGGATCTGAATACCCAGCTTAGGCAACTAGTAGAAACAAAGGAGGCAATTGAACGGCAGCGCAAATTGTTTAAGAAAAAACAATCTGACAAGGGTGATGGAACAGAAACAGAGGCTGGATTACCGGAAGATGTTCTCATTCATGATGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGAGAAGAAGAAATTATTTTGCGGGAGAGGGATCGCTATGAACTTGAGAAGGGGAGGTTGATACGTGAAATGAAACGCATACGGGATGAAGATGGCTCACGGTTTAACAACTTTCAGATTCTAAATCATCGCTATGCCCTTCTAAACCTTCTTGGGAAGGGAGGGTTCAGTGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATACGGCATGCCATTCGGGAGTATAATATTCACAAGACCCTGGTGCATCGTCACATTGTTCGTTTATGGGACATCTTTGAGATTGATCAAAATACATTCTGCACTGTTCTAGAGTACTGTAGTGGGAAGGATCTTGATGCTGTCCTTAAAGCAACACCTATATTGCCTGAGAGGGAGGCCAGGGTCATTCTAGTTCAGATTTTTCAAGGCCTTATTTATATGAATAAAAGAACACAGAAGATTATACATTATGATTTAAAGCCTGGAAATGTTCTGTTTGACGAGCTTGGTATTGCCAAAGTGACTGATTTTGGTCTTAGCAAAATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTGATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTCTATCAAATGCTCTTTGGCAGACGTCCTTTCGGGCATGACCAAACACAGGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACGCAAGGTTGAATTTCCTTCTAGACCTACTGTTTCTAATGAGGCAAAGGTGAGGATTTTATCCGGCGGTGTCTAA 1968 0.4212 MSDDMLMHFSSNSSNQSDQSLPTKIAKLEARMVGKASSTAAQQSGWPSLPSAAKFGGAAAEDLAEPSTSSDSDDDNGGEFLIQANTQKRLKLQEHDNSNVFEHVEVATDGRQTSLEAVETKTNFDVNRKKHGRGRASSGSGRGRGSRVNDQTRIQISPPTVLASNGQIENAYHKDGRLKDQFHNDNCATLEEEVASLHAKVVALEEELRKSKQETSDYQNLCRQLEKELKDLTDHEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTILSETWEDGQALKDLNTQLRQLVETKEAIERQRKLFKKKQSDKGDGTETEAGLPEDVLIHDEIYKSRLASIKREEEIILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKVRILSGGV 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3807g00049 655 MobiDBLite consensus disorder prediction 122 149 - -
Gabi3807g00049 655 ProSitePatterns Protein kinases ATP-binding region signature. 406 429 IPR017441 GO:0005524
Gabi3807g00049 655 CDD STKc_TLK 399 647 - -
Gabi3807g00049 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Gabi3807g00049 655 Coils Coil 295 322 - -
Gabi3807g00049 655 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3807g00049 655 PANTHER MIXED LINEAGE PROTEIN KINASE 10 647 - -
Gabi3807g00049 655 Coils Coil 187 238 - -
Gabi3807g00049 655 MobiDBLite consensus disorder prediction 1 79 - -
Gabi3807g00049 655 SMART serkin_6 400 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00049 655 Gene3D Transferase(Phosphotransferase) domain 1 391 652 - -
Gabi3807g00049 655 Pfam Protein kinase domain 401 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00049 655 ProSiteProfiles Protein kinase domain profile. 400 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00049 655 SUPERFAMILY Protein kinase-like (PK-like) 392 623 IPR011009 -
Gabi3807g00049 655 FunFam Serine/threonine-protein kinase TOUSLED 391 652 - -
Gabi3807g00049 655 Coils Coil 351 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3807g00049 Gabi-Chr3807 483999 495106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3807g00049 390 647 EF-hand Containing Proteins AT2G17890 31.852 1.06e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Gabi3807g00049 Pkinase 1.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3807g00049 K08864 - gmx:100805168 1124.77