Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3807g00033 ATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGATAGAGAAAGAGCAGAGGGAGAGGAAGGAGAAAGCGAGATTGAAACTGCAGAAGGAAAGGAAGGCCAAAGAAGAGGCTCGGAAGCAAAGGGAAGCCATCGAAGCTACTCAAAGATCTCGTCGTATCGATGCAGCCGAAGCCCAACTCAAGGCTGACCAACATATGCAAGAAAACCTACTTGCTGGGAGAGGAATTGTGTTTTATCGTTTACTAGAAGCTGTACCTTATCAAGGTAGTGGAGATAAGATCAAACTACCTCTTTCTTGCTTCACAGAATTGTCTGATCAAGGTGCCTTTGATAAGGGACCCATGTACTTTCAGTTGTTGTTAGTTCATCAGGAAGGCTCTTCGGGCGTTAAAGGTGCTGATAAAGAGAAACAGGGGACCACCCATTCAGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTGGGTCTTCCTCCTCATGTATGGAAAAATTTATTTTCTGAAGGCGCTACAAAATCTCCATTGGTTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGACTTATGCAAAACTTCAACCTGAAAGAGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTGGAAACAAGTCTTCGGCAGCATGCTACTCTTTCTCAAGGTGACATTTTAACAGTAAACTATGGAGAACTTGCATACAACTTAAGGGTGCTTGAGCTAAAACCTTCTTCAAGTGTATCTGTTTTAGAAACAGATATTGAAGTTGACATAGTTGATCCTGATACGTCCTCAGAAAAGACTGATCAGCATGTTTTAATGCCAGTTGTATTTGGGACGTCACAAACGGGAACAGTAGATGAAGGAAAGTTTGTGTATTATAAATTTTCAATAGACAATGGCACTTGGGAGAAAATCTCTACTGGGAATTCTAGTGTTGAGGTAAAATTAGAATCAGAGACAGATGGGGGAGACACTGATCTTTTCATTTCTAGACATCCTGTCATATTTCCTACACGGCACCAGCATGAGTGGTCTTCCCATGATATTGGCTCAAAGACTTTGATTCTTAGCTCTAAAGATAAAAATTTAGGTGCAGGGACGTACAGCATTGGTATATATGGCTTTAAGGGAATGACTAAGTACAAAATATCAGTCACGATCCAGGATAATTTCAACCAAAAAGTGGGTCAACAAGCATCATCTTCCATGTCATCTGCAGAAATGGATACTCAGCAGTGTAGGAACTGCAAACATTACATACCCACTAGGACTATTGCACTGCATGAAGCTTACTGTAGCAGGCATAATGTTGTCTGTCAGCATGTAGGCTGTGGAGTTGTTCTTAGGATCGAGGAGTCCAAGAATCACATTCACTGTGACAGGTGTGGTCAAGCTTTCCAGCAGGTAGAATTGGAAAAGCACATGAAAGTTTTTCATGAGCCAATTCATTGCCCTTGTGGAATAATCCTTGAGAAAGAGCAAATGGTGGAGCACCAAGCTTCAATATGCCCCTTGCGTTTAATTCCATGCCGGTTTTGTGGTGATATGGTTCAAGCTGGAAATTCTGCCATGGACGTCCGTGACAGATTAAGAGGATTGTCTGAGCATGAGAGTATTTGTGGGTCTAGAACTGCCCCCTGTGATTCTTGTGGGCGTTCAGTGATGTTGAAGGACATGGACATACACCACATTGCTGTTCATCAAAAAGGCTAA 1713 0.4215 MDFELRRAREKIEKEQRERKEKARLKLQKERKAKEEARKQREAIEATQRSRRIDAAEAQLKADQHMQENLLAGRGIVFYRLLEAVPYQGSGDKIKLPLSCFTELSDQGAFDKGPMYFQLLLVHQEGSSGVKGADKEKQGTTHSGVLEFTADEGSVGLPPHVWKNLFSEGATKSPLVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYNLRVLELKPSSSVSVLETDIEVDIVDPDTSSEKTDQHVLMPVVFGTSQTGTVDEGKFVYYKFSIDNGTWEKISTGNSSVEVKLESETDGGDTDLFISRHPVIFPTRHQHEWSSHDIGSKTLILSSKDKNLGAGTYSIGIYGFKGMTKYKISVTIQDNFNQKVGQQASSSMSSAEMDTQQCRNCKHYIPTRTIALHEAYCSRHNVVCQHVGCGVVLRIEESKNHIHCDRCGQAFQQVELEKHMKVFHEPIHCPCGIILEKEQMVEHQASICPLRLIPCRFCGDMVQAGNSAMDVRDRLRGLSEHESICGSRTAPCDSCGRSVMLKDMDIHHIAVHQKG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3807g00033 570 Gene3D - 185 258 - -
Gabi3807g00033 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 530 IPR013083 -
Gabi3807g00033 570 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 22 516 IPR004854 GO:0006511
Gabi3807g00033 570 Gene3D - 279 393 - -
Gabi3807g00033 570 MobiDBLite consensus disorder prediction 1 45 - -
Gabi3807g00033 570 Gene3D - 77 183 IPR042299 -
Gabi3807g00033 570 Pfam Ubiquitin fusion degradation protein UFD1 90 260 IPR004854 GO:0006511
Gabi3807g00033 570 Coils Coil 5 50 - -
Gabi3807g00033 570 ProSitePatterns Zinc finger C2H2 type domain signature. 547 567 IPR013087 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3807g00033 UFD1 7.2e-48 CL0402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3807g00033 - - gmx:100777384 976.467