Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3807g00016 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGGCCTTTCTTCCATGGACATGATGAACATTGAAACTAATAGCAAGTTTCTTTCTCTTCCTCTCAGCAACAATGATCGAAGGGTTTCTTCCTTGAACATGGCTCAAGATCGTAACTATAGCCACCATGACCACACCAACACTTGCACTGCGAGGGATAAAATCATGGCACATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACATCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTTGTGGCTAGCTTAGAAGAATCATGTGCAAAATGTGAAGCCTTAAATGCATCAGGTAGGACAGGAACAGGTTCATTAGGTGAAGATCCAGCACTGGATCAGTTCATGGAGGCCTATTGTGAGATGCTAGTCAAGTATGAACAAGAGATCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATTGACTGTCAGCTTAAAGCTCTATCAGTTTCAACAGACTTTGGCCAAAGTGAATCATCTTCACAGAATGAGGCTGATGTGGATGAAAACAACCTAGATACTCAAGCTGAAGACCGGGAACTAAAACTCCAGCTTTTGCGCAAGTATAGTGGCTATCTTGGAAGCCTCAAGAAGGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTAGACAACATCTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCACTTGCTGAATCCACAGGCCTAGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAAACGCCATTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAACTATTACATGGAAAATGTTATGTGCAAGCCATTTCCCATGGATGGCATGCCTATGCTTCTTTAA 924 0.4264 MIGFGGNSCSGLSSMDMMNIETNSKFLSLPLSNNDRRVSSLNMAQDRNYSHHDHTNTCTARDKIMAHPLFPRLLSSYINCLKVGAPPEVVASLEESCAKCEALNASGRTGTGSLGEDPALDQFMEAYCEMLVKYEQEITKPFKEAMLFFSRIDCQLKALSVSTDFGQSESSSQNEADVDENNLDTQAEDRELKLQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQHLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3807g00016 307 CDD homeodomain 223 275 IPR001356 GO:0003677
Gabi3807g00016 307 SMART KNOX2_2 110 161 IPR005541 GO:0003677|GO:0005634
Gabi3807g00016 307 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Gabi3807g00016 307 SMART ELK_2 191 212 IPR005539 GO:0003677
Gabi3807g00016 307 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Gabi3807g00016 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 281 - -
Gabi3807g00016 307 Pfam KNOX1 domain 61 101 IPR005540 GO:0003677|GO:0005634
Gabi3807g00016 307 Pfam KNOX2 domain 114 159 IPR005541 GO:0003677|GO:0005634
Gabi3807g00016 307 ProSitePatterns 'Homeobox' domain signature. 249 272 IPR017970 GO:0000981|GO:0006355
Gabi3807g00016 307 SMART HOX_1 213 278 IPR001356 GO:0003677
Gabi3807g00016 307 Gene3D - 209 282 - -
Gabi3807g00016 307 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Gabi3807g00016 307 Pfam ELK domain 191 212 IPR005539 GO:0003677
Gabi3807g00016 307 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Gabi3807g00016 307 SUPERFAMILY Homeodomain-like 213 285 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3807g00016 Gabi-Chr3807 139478 142427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3807g00016 60 301 Homeobox Transcription Factor Family AT1G62360 67.578 6.74e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi3807g00016 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3807g00016 - - gmx:100791704 530.02