Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3807g00004 ATGGTGTCCCTTCTTTTATTTCGGTGGATTCTCATAATGCTTTTCTGTTCACTTTTAAGGCTTTCTTACTTTCAAGCTTCTGGCATTTGCACGTTTACTTCTATTCCCTTTGCTGCAACTACAACTACAGCTACAATTGGTTATGAAGACCAAAACAGCGAAGCAAGTGCTCTATTAAAGTGGAAAGCCAGCCTTGAAAACCAAAGCCAAGCTTCCTTGTCCTCTTGGACCACCATAACTGCCACTCCTTGCAACTGGGAAGGAATTGTTTGTGACGAATCCAAGTTTGTCACCACTATAAATGTTACAAATTCTGGACTTAAAGGTACTCTTCTTGGTCTCAACTTCTCATCCTTTCCCAAGTTGATGTGTCTGGATATAAGTCACAACTCGTTTCATGGAACTATTCCCCACCAAATTGGTAATTTGTCTAGAATTTCTCAACTGAAAATGGATCATAATCTCTTCTGTGGTATCATCCCCCTAGAAATAGGAGCACTGAGATATCTAAGTCATCTTGATATTGGAAGGTGTAAGCTCAATGGGTCAATCCCTATTTCCATAGTGAAGTTGGCCAACTTGTCATATCTAGATTTAGCTGGCAATCAACTTTCTGGCTGTATTCCTCAGGAGATTGGGGAATCACGTAACTTGAAGTATCTGTCTTTACGAGCAAATGGACTTTCTGGTTCCATTCCTCCAACAATTGGAATGTTGACAAATCTCGTTAAACTTGATTTGTCAACTAACTCTCTCTCTGGTGCAATTCCTTCAATGAGAAACTTGAGAAATTTAGAACAACTTGTACTCTTTAACAACCGTCTCTCTGGTCAAATCCCATCTTCCATTGGAGACTTGGCCAATTTGAGTAAGCTTCAGCTCACTGGTAATAAACTTGATGGATCAATTCCTTCCGCACTTGGAAACTTGACAAAACTTATCCAATTGTCCTTGTCAGAAAACAAGCTTTCTGGATCAATTCCTGCTTCCTTAGGAAACTTGGTCAATCTAGAGCGGCTTAGCCTTTCAGAAAACAATCTTTCTGGACCTATTCCTTCTACCTTTGGAAATTTGACAAAACTCACCCACCTATTACTTCATATGAACAACCTTAACGGTTGTCTCCCGCCAACAATGAATAAGGTCACTAATTTGAAAAGCTTACAACTAAGTGCCAATGATTTCACTGGCCCTTTGCCACAACAGATTTGCCTTGGTGGGTCGCTGACAAATTTTTCTGCTGATAAGAATCATTTCACCGGTCCAGTTCCAATAAGCTTGAAGAATTGCTCCAGCCTTTTTAGGCTCAACCTTGCGAGAAACATGTTGACTGGAAATATATCCGATGATTTTGGTGTATATCCAAAGTTGAACTACATTGATCTGAGTGATAATCATTTTTATGGCAAACTTTCACCAAATTGGGCAAAGTGCCCTAGTCTCACAAGCCTTAAGATTTCCAACAACAATTTATCCGGTGGAATACCACCAGAACTCGGCCAGGCTCCCAAGTTAGAATTACTTAATCTGTCTTCAAATCATCTAACAGGGAAAATTCCAAAAGAACTATGTAACTTGACCTCATTGTTTCAACTCTCGTTAAGTAATAATGAGCTTTCAGGCAACATTCCCATAGAAATAGGATCTATGGTGAAACTTGAACTTTTGGAGTTGGCAGCAAATAATTTAAGTTGCCCAATCCCAAAAGAGCTCGGACAGTTGCTCATTTTATTGAATTTGAATTTGAGCAAGAATAAATTCGTGGAAAGCATTCCATCTGAACTTGGGCAACTGCAATCTCTTAAAAGTCTCGATCTCAGTGTGAATTCGTTGAATGGACAAATACCAGCTACGTTTGGAAAGTTGCAAAGATTGGAAACGTTGAACCTCTCACACAATAATCTCTCTGGAACAATTCCATCTGATTTTAAGGATATGTTCAGCTTGACATATGTTGACATATCTAACAACCAATTGGAGGGTCCAATTCCTAACAATCCAGCATTTTCCAAAGCTCCAATTGAAGCATTGGAAAATAATAAAGGCTTGTGTGGTAATGCCTCCGGCTTGGTGCCTTGCCGAGAGTTGCGTCACAACCTATTGGTACTATTCCTTATTCTGGGTGCTCTATTGGTAGTAGTGTTGGTGGTTGGAGTTTCATTATGTATTCATTGTCTAAGAGCAAGAAAAATCAAAATGCAGGCTGGAGAAGAACAAATTCAAGATCTTTTTTCCATATGGAATTATGATGGAAAATTAGTACATGAAAATATCATTGAAGCCACAGAGGAGTTTGATGACAAATATCTCATTGGAGAAGGAGGATCTGGAGCTGTTTACAAGGCTATCTTATCCACAGGACAGGTTGTTGCTGTGAAAAAACTTCATGCTGCAGCAGTAGATGGGGAAATGCTTGATTTTAAAGCTTTTGCAACTGAAGTTCGAGTCTTAACAGAAATCAGACATCGTAACATTGTGAAGTTGTATGGATTTTGTTCACATCCACGCTACTCTTTTTTGGTTTATGAGTTCCTGGAAGGGGGCAGCTTGGATAAAGTACTAAAAAATGATACACATGCAACAATGTTTGATTGGAATAGGAGGGTGAATGTTGTTAAAGGGATGGCAAATGCTCTATACCATATGCATCACGGTTGCTCCCCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTAGATTTGGAATATGAAGCTCGCATCTCTGACTTTGGAACAGCTAAGATTCTGAATCCTGATTCACGCAATTTATCCTCGTTTGCAGGAACCTATGGGTATGCTGCACCAGAGCTTGCTTATATTACGGCAGTGAATGAGAAATGTGATGTCTTTAGTTTTGGAGTGCTTTCTTTGGAAATAATCATGGGGAAGCATCCAGGAGATCTCATATCTTCATTGTTTTCATCCTCTGAAATGTCAGTAGCCTCTCATTTGCTATTGAAAGATGTGCTGGATCAACGACTTCCACATCCAATGAAGCCAGTTGTTAAGGAGGTGATCTTGATTGCAAAAATAGCATTTGCTTGCTTGAGTGAAAGTCCACATTCTCGCCCAACCATGGAAGAAGTGCATAACATGTTTGTGATGTCAAAACTACCTTTAATGGAGACATTCCGCATCATCACACTTGGACAACTTCTAAATTATTGA 3177 0.3944 MVSLLLFRWILIMLFCSLLRLSYFQASGICTFTSIPFAATTTTATIGYEDQNSEASALLKWKASLENQSQASLSSWTTITATPCNWEGIVCDESKFVTTINVTNSGLKGTLLGLNFSSFPKLMCLDISHNSFHGTIPHQIGNLSRISQLKMDHNLFCGIIPLEIGALRYLSHLDIGRCKLNGSIPISIVKLANLSYLDLAGNQLSGCIPQEIGESRNLKYLSLRANGLSGSIPPTIGMLTNLVKLDLSTNSLSGAIPSMRNLRNLEQLVLFNNRLSGQIPSSIGDLANLSKLQLTGNKLDGSIPSALGNLTKLIQLSLSENKLSGSIPASLGNLVNLERLSLSENNLSGPIPSTFGNLTKLTHLLLHMNNLNGCLPPTMNKVTNLKSLQLSANDFTGPLPQQICLGGSLTNFSADKNHFTGPVPISLKNCSSLFRLNLARNMLTGNISDDFGVYPKLNYIDLSDNHFYGKLSPNWAKCPSLTSLKISNNNLSGGIPPELGQAPKLELLNLSSNHLTGKIPKELCNLTSLFQLSLSNNELSGNIPIEIGSMVKLELLELAANNLSCPIPKELGQLLILLNLNLSKNKFVESIPSELGQLQSLKSLDLSVNSLNGQIPATFGKLQRLETLNLSHNNLSGTIPSDFKDMFSLTYVDISNNQLEGPIPNNPAFSKAPIEALENNKGLCGNASGLVPCRELRHNLLVLFLILGALLVVVLVVGVSLCIHCLRARKIKMQAGEEQIQDLFSIWNYDGKLVHENIIEATEEFDDKYLIGEGGSGAVYKAILSTGQVVAVKKLHAAAVDGEMLDFKAFATEVRVLTEIRHRNIVKLYGFCSHPRYSFLVYEFLEGGSLDKVLKNDTHATMFDWNRRVNVVKGMANALYHMHHGCSPPIVHRDISSKNVLLDLEYEARISDFGTAKILNPDSRNLSSFAGTYGYAAPELAYITAVNEKCDVFSFGVLSLEIIMGKHPGDLISSLFSSSEMSVASHLLLKDVLDQRLPHPMKPVVKEVILIAKIAFACLSESPHSRPTMEEVHNMFVMSKLPLMETFRIITLGQLLNY 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3807g00004 1058 Gene3D Phosphorylase Kinase; domain 1 727 844 - -
Gabi3807g00004 1058 FunFam MDIS1-interacting receptor like kinase 2 845 1042 - -
Gabi3807g00004 1058 Gene3D Ribonuclease Inhibitor 50 212 IPR032675 -
Gabi3807g00004 1058 SUPERFAMILY Protein kinase-like (PK-like) 753 1038 IPR011009 -
Gabi3807g00004 1058 Gene3D Transferase(Phosphotransferase) domain 1 845 1042 - -
Gabi3807g00004 1058 Gene3D Ribonuclease Inhibitor 382 694 IPR032675 -
Gabi3807g00004 1058 Pfam Protein kinase domain 767 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00004 1058 FunFam Nuclear pore complex protein NUP107 51 208 - -
Gabi3807g00004 1058 FunFam Uncharacterized protein 408 697 - -
Gabi3807g00004 1058 SMART LRR_typ_2 598 621 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 334 357 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 310 333 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 358 381 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 550 574 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 382 406 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 239 261 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 478 502 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 622 645 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 503 526 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 191 215 IPR003591 -
Gabi3807g00004 1058 SMART LRR_typ_2 262 286 IPR003591 -
Gabi3807g00004 1058 PRINTS Leucine-rich repeat signature 622 635 - -
Gabi3807g00004 1058 PRINTS Leucine-rich repeat signature 242 255 - -
Gabi3807g00004 1058 SUPERFAMILY RNI-like 340 661 - -
Gabi3807g00004 1058 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 348 451 - -
Gabi3807g00004 1058 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 235 329 - -
Gabi3807g00004 1058 FunFam Leucine-rich repeat receptor protein kinase MSP1 728 844 - -
Gabi3807g00004 1058 Gene3D Ribonuclease Inhibitor 213 381 IPR032675 -
Gabi3807g00004 1058 Pfam Leucine rich repeat 600 659 IPR001611 GO:0005515
Gabi3807g00004 1058 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Gabi3807g00004 1058 Pfam Leucine rich repeat 479 539 IPR001611 GO:0005515
Gabi3807g00004 1058 ProSiteProfiles Protein kinase domain profile. 765 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00004 1058 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 330 407 - -
Gabi3807g00004 1058 Pfam Leucine rich repeat N-terminal domain 52 92 IPR013210 -
Gabi3807g00004 1058 SUPERFAMILY L domain-like 68 400 - -
Gabi3807g00004 1058 ProSitePatterns Tyrosine protein kinases specific active-site signature. 890 902 IPR008266 GO:0004672|GO:0006468
Gabi3807g00004 1058 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3807g00004 Gabi-Chr3807 72756 76110 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3807g00004 54 938 Receptor kinase-like Gene Family AT4G08850 47.456 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3807g00004 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3807g00004 - - gmx:100797314 1248.03