Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3807g00001 ATGGTGTCCGCTCAGCTTACATCCTCTCGACTGATTCTCATAACGTTGTTCTATTCACTTTTAAGGCTCTTGTATTTTTCCCATGTTTCTAACGTTTTCACTTTTCCTTCTTTTGCCTCTGCTAGCATTACTGCTGCTTATGAAGCTGCAGAAAATCAAGACAGTGAAGCAAGTGCTCTATTAGAATGGAAAGCTAGCCTTGACAACCAAAGCCAAGCTTCTCTGTCTTCTTGGACCTCTGGTGTCAGTCCTTGTAAGAAGTGGGAAGGAATTGTTTGTGACGAATCCGAGTCTGTCACCACTATAGATGTTTCAAATTCTGGTCTTAAAGGTACTCTTCTCAGTCTCAAATTCTCATCCTTTCCTAAACTGCTCATTCTGGATATTAGTAACAACTCTCTTAATGGAACTATTCCCCAACAAATTGGTAACTTGTCCCGAATTTCTCAATTGAGAATGGGATCAAATAAACTTTCTGGTTCCATTCCCCCAACAATTGGAATGTTGACAAATCTCATTCGACTTGACTTGTCAGATAATTCTCTCTTGGGTACAATCCCTTCAATTAGTAGCTTGAGAAATTTAGAACTACTTTGTCTCTATAACAACAGTCTCTCTGGCCCCATTCCTGAGGAATTGGGAAAACTCTCTGCTCTAACAACAGTTGTGTTGTCCAACAATAACTTGTCTGGGCCAATCCCACCCTCCATAGGAGATTTGTTCAATTTGATTAAGTTTGAATTTCCTAATAATACAGTTTATGGATCAATTCCTCCCACTATTGGAAACATGACTAAACTGACCTATTTGCACATGGGCCAGAACTCAATTTCTGGATCAATTCCTACCTCCATGGGAAACTTGGTAAATCTAATAGCACTTGACCTTTCAGGGAACCATATTTCTGGACTTATTCCCTCCACCTTTGGAAATTTGACAAAGCTTGCCTTCTTAATAGTGTATCAGAACAAACTTCATGGTAGATTACCACCAGCACTGAATAACTTTACCAATTTCCAAAACTTACAACTATCTACCAATAGTTTCAACGGTCCTTTGCCTCAAGAGATTTGCCTTGGAGGGTCACTTTTAAAATTTGCTGCTAACCGTAATTATTTCACCGGTCCAGTTCCAAGAAGCTTGAAGAATTGCTCCAGCCTTTTTAGGCTCAACCTTTCGGGAAACATGTTGACTGGAAATATATCCGATGATTTTGGTGTGTATCCAAATTTGTCTTTCGTTGAGTTGAGTAGCAATAATTTTTACGGTCACCTTTCACCAAATTGGGCAAATTGCTCTAGTCTCACAAGCCTTAGGATTTCTAACAACAATTTATCCGGTGGCATCCCACCAGAACTCGGCCAGGCTCCCAATTTAGAAGTGCTTAATCTGTCTTCAAATCATCTAACAGGGAAAATTCCAAAAGAACTTTGTAGCTTGACCTCATTGTTTCAACTCTCCTTAAGTAACAATGAACTTTCAGGCAACATTCCCATAGAAATAGGATCTATGACGAAACTTAGATTTTTGGAGCTGGCAGCAAATAATTTAAGTGGCCCAATCCCAAAAGAGCTCGGAGGGTTGCACATTTTATCGACTTTGAATTTGAGCAAGAATGAATTCATAGAAAGCATTCCCTCTGAATTTGGGCAACTGCAATCTCTTGAAAATCTCGACCTCAGTGTGAATTTGTTGAATGGACAAATACCAGCAGCTACGTTTGGAAAGTTGCAAAGATTGGAAGAGCTGAACCTCTCGCACAATAATCTCTCAGGCACAATTCCATCTGATTTTAAAGATATGTTGAGCTTGACATATATTGACCTATCCTACAACCAATTAGAGGGTCCAATTCCAGCATTTACCAAAGCTCCAATTGAATCATTGAAAAATAATAAAGGCTTGTGTGGTAATGCATCCGGCTTGGTGCCTTGCCGATCTCATGGTCAAAAGAAAAGAAGAGTCATGAGATGGGCACTATTGATTACTTTGGGTGTTCTATTGGTAGTAGTGTTCTTGGTTGGAGTTGCATTTTGTATTCATTGTCAAAGAGCAAGAAAAACCAAACAGGAAGCTAAAGAAGAACAAACTCAAGATCATTTTTCCATATGGAGTTATGATGGAAAAATGGCGTATGAAAATATCATTGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGAAGGAGGGTCTGCATCTGTTTACAAGGCTAAATTACCCAATGGACAGGTTGTTGCTGTGAAGAAACTTCATGCTACACTCAACGGGGAAATGCTCGATCTTAAAACTTTCACATCTGAAGTTCGAGCCTTGACAGAAATCAAACATCGTAACATTGTGAAGTTATGTGGATTCTGTACACATCCACGTTTCTCATTTCTGGTGTATGAGTTCATGGAAGGGGGTAGCTTGGATAAAGTACTAAAAAATGATACACATGCAACAATGTTTGATTGGAATAGGAGGGTGAATGTTGTTAAAGGGGTGGCAAATGCTCTATACCATATGCATCACGGTTGCTCCCCTCCTATAGTTCATCGTGACATATCAAGCAAGAATATTCTTTTAAATTTGGAATATGAAGCTCGCATCTCTGACTTTGGAACAGCTAAGATTCTGAATCCTGATTCACACAATTTAACCTCGTTTGCGGGCACTTACGGGTATTGTGCACCAGAGCTTGCTTACACCATGGAAGTGAATGAGAAGTGTGATGTCTTTAGTTTTGGTGTGCTTTCTTTGGAAATAATAATGGGAGAGCATCCAGGAAATCTCATATCTTCACTGTTTTCATCATCCGCTGCGAAGTCAGTAGCATCTAATTTGCTATTGAAGGATGTGTTGGAGCCACGACTTCCTCATCCGGTGAAGCCAGATGTTGAGGAGGTTATCTTGATTGCAAAAATAGCATTTGCTTGCTTAAATGAGGATCCGCGTGTTCGTCCAACCATGGAAGAAGTTTATAATGAGTTTGTGATGCCAAAATCACCTTTAGAGGAATCGTTCTCCATGATCACCCTTGGACAACTACTAAATACATGA 3048 0.3967 MVSAQLTSSRLILITLFYSLLRLLYFSHVSNVFTFPSFASASITAAYEAAENQDSEASALLEWKASLDNQSQASLSSWTSGVSPCKKWEGIVCDESESVTTIDVSNSGLKGTLLSLKFSSFPKLLILDISNNSLNGTIPQQIGNLSRISQLRMGSNKLSGSIPPTIGMLTNLIRLDLSDNSLLGTIPSISSLRNLELLCLYNNSLSGPIPEELGKLSALTTVVLSNNNLSGPIPPSIGDLFNLIKFEFPNNTVYGSIPPTIGNMTKLTYLHMGQNSISGSIPTSMGNLVNLIALDLSGNHISGLIPSTFGNLTKLAFLIVYQNKLHGRLPPALNNFTNFQNLQLSTNSFNGPLPQEICLGGSLLKFAANRNYFTGPVPRSLKNCSSLFRLNLSGNMLTGNISDDFGVYPNLSFVELSSNNFYGHLSPNWANCSSLTSLRISNNNLSGGIPPELGQAPNLEVLNLSSNHLTGKIPKELCSLTSLFQLSLSNNELSGNIPIEIGSMTKLRFLELAANNLSGPIPKELGGLHILSTLNLSKNEFIESIPSEFGQLQSLENLDLSVNLLNGQIPAATFGKLQRLEELNLSHNNLSGTIPSDFKDMLSLTYIDLSYNQLEGPIPAFTKAPIESLKNNKGLCGNASGLVPCRSHGQKKRRVMRWALLITLGVLLVVVFLVGVAFCIHCQRARKTKQEAKEEQTQDHFSIWSYDGKMAYENIIEATEEFDDKYLIGEGGSASVYKAKLPNGQVVAVKKLHATLNGEMLDLKTFTSEVRALTEIKHRNIVKLCGFCTHPRFSFLVYEFMEGGSLDKVLKNDTHATMFDWNRRVNVVKGVANALYHMHHGCSPPIVHRDISSKNILLNLEYEARISDFGTAKILNPDSHNLTSFAGTYGYCAPELAYTMEVNEKCDVFSFGVLSLEIIMGEHPGNLISSLFSSSAAKSVASNLLLKDVLEPRLPHPVKPDVEEVILIAKIAFACLNEDPRVRPTMEEVYNEFVMPKSPLEESFSMITLGQLLNT 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3807g00001 1015 Gene3D Ribonuclease Inhibitor 52 191 IPR032675 -
Gabi3807g00001 1015 SUPERFAMILY Protein kinase-like (PK-like) 703 992 IPR011009 -
Gabi3807g00001 1015 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515
Gabi3807g00001 1015 ProSiteProfiles Protein kinase domain profile. 722 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00001 1015 Pfam Leucine rich repeat 569 614 IPR001611 GO:0005515
Gabi3807g00001 1015 Pfam Leucine rich repeat 434 493 IPR001611 GO:0005515
Gabi3807g00001 1015 Gene3D Ribonuclease Inhibitor 360 647 IPR032675 -
Gabi3807g00001 1015 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Gabi3807g00001 1015 SMART LRR_typ_2 121 145 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 504 528 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 457 480 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 552 576 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 288 311 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 216 240 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 169 192 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 432 456 IPR003591 -
Gabi3807g00001 1015 SMART LRR_typ_2 577 600 IPR003591 -
Gabi3807g00001 1015 FunFam MDIS1-interacting receptor like kinase 2 801 999 - -
Gabi3807g00001 1015 Pfam Leucine rich repeat N-terminal domain 54 94 IPR013210 -
Gabi3807g00001 1015 PANTHER LEUCINE RICH REPEAT KINASE 2 302 1003 - -
Gabi3807g00001 1015 ProSitePatterns Protein kinases ATP-binding region signature. 728 751 IPR017441 GO:0005524
Gabi3807g00001 1015 FunFam Leucine-rich repeat receptor protein kinase EMS1 189 284 - -
Gabi3807g00001 1015 Gene3D Phosphorylase Kinase; domain 1 681 800 - -
Gabi3807g00001 1015 PRINTS Leucine-rich repeat signature 124 137 - -
Gabi3807g00001 1015 PRINTS Leucine-rich repeat signature 577 590 - -
Gabi3807g00001 1015 Gene3D Transferase(Phosphotransferase) domain 1 801 1003 - -
Gabi3807g00001 1015 Pfam Protein kinase domain 724 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3807g00001 1015 FunFam Nuclear pore complex protein NUP107 53 188 - -
Gabi3807g00001 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 336 649 - -
Gabi3807g00001 1015 Gene3D Ribonuclease Inhibitor 192 284 IPR032675 -
Gabi3807g00001 1015 FunFam Leucine-rich repeat receptor protein kinase MSP1 685 800 - -
Gabi3807g00001 1015 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
Gabi3807g00001 1015 Gene3D Ribonuclease Inhibitor 289 359 IPR032675 -
Gabi3807g00001 1015 ProSitePatterns Tyrosine protein kinases specific active-site signature. 846 858 IPR008266 GO:0004672|GO:0006468
Gabi3807g00001 1015 SUPERFAMILY RNI-like 329 619 - -
Gabi3807g00001 1015 SUPERFAMILY RNI-like 102 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3807g00001 Gabi-Chr3807 43219 46603 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3807g00001 56 894 Receptor kinase-like Gene Family AT4G08850 43.929 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3807g00001 Pkinase 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3807g00001 - - gmx:100795732 1255.35