Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3802g00001 | ATGGCTTCCTCTTCGGACTCATGGGTGAAGGAATATAATGAAGCAGTTAAACTTGCTGATGATATCAGTGGCATGGTTTCTGAGCTGAGTTCATTTCCCGCATCTGGACCAGAAACTCAGCGCCATGCTTCTGCTATAAGAAGGAAGATTACAATATTGGGGACCAGGCTTGATGGCTTGCAATCCCTTTTGTCAAAGCTTCCTGGAAAGCAGCCTATATCTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGCAAACTTGAGATCAAAAGTTAACCAAATGGCTTCCACGTTGAATATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAACAAAACCAGATGCAATGAGCAGAACTGTTGGTCTGGACAACAGTGGACTTGTTGGACTTCAACGTCAAATTATAAAAGAACAAGATGATGGGCTTGAGAAATTGGAGAAGACAGTAACAAGCACGAAACATATTGCGTTAGCAGTGAACGAAGAGCTGGATCTACACACTAGACTCATTGATGACTTGGACCAACATGTAGATGTCACTGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTGGCAGTTTTAAATAAACGAACCAAGGGTGGTTGCTCCTGCTTTTGCTTGCTTTTATCAGTGATTGGTATAGTGGTTTTGGTGGTTGTCATTTGGCTGTTGGTCAAATATTTGTAA | 699 | 0.4278 | MASSSDSWVKEYNEAVKLADDISGMVSELSSFPASGPETQRHASAIRRKITILGTRLDGLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPETKPDAMSRTVGLDNSGLVGLQRQIIKEQDDGLEKLEKTVTSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCFCLLLSVIGIVVLVVVIWLLVKYL | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3802g00001 | 232 | CDD | SNARE_Qc | 139 | 196 | - | - | |
| Gabi3802g00001 | 232 | SUPERFAMILY | SNARE fusion complex | 127 | 197 | - | - | |
| Gabi3802g00001 | 232 | Pfam | SNARE domain | 173 | 224 | IPR000727 | - | |
| Gabi3802g00001 | 232 | SMART | tSNARE_6 | 131 | 198 | IPR000727 | - | |
| Gabi3802g00001 | 232 | SUPERFAMILY | t-snare proteins | 31 | 100 | IPR010989 | GO:0016020|GO:0016192 | |
| Gabi3802g00001 | 232 | FunFam | syntaxin-51 isoform X2 | 138 | 200 | - | - | |
| Gabi3802g00001 | 232 | PANTHER | SYNTAXIN | 21 | 218 | IPR045242 | - | |
| Gabi3802g00001 | 232 | Gene3D | - | 138 | 200 | - | - | |
| Gabi3802g00001 | 232 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 136 | 198 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3802g00001 | Gabi-Chr3802 | 10895 | 13783 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3802g00001 | 1 | 232 | SNARE and Associated Proteins | AT1G16240 | 72.103 | 5.33e-124 | 349 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3802g00001 | K08503 | - | gmx:100782666 | 384.8 |