Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00061 ATGGCGTCAGAAGAGCCCACTGTTGCCGTGGAACCCGTACCTGAGCCGAGCAGCACCGAACCACTGCCTCTGCCTGAGGAAAAAGAGGAAACAATGCCTGAAGCTGAAGCTGCGCCAGCCAAGGCGAAGAAAGCCAAGGATCCCAAACCTAAGAAAGTTTCTGCTCCTAAACCACGGAACCCTTCCTCTCATCCTTCTTATGAAGAGATGATTAAGGATGCGATTGTGACGCTGAAGGAGAAGACAGGTTCGAGCCAATATGCGATTGCCAAGTTCATCGAAGAAAAGCATAAGCAGCTTCCTCCTAACTTCAGGAAGCTATTGCTTAACCATTTGAAGAAGCTCGTCGCTTCTGAAAAGCTCGTTAAGGTTAAAGGCTCTTTCAAGCTTCCTCCAGTCAAGTCATCGCCGGCGACCGCATCATCTTCCCCAGCCAAGAAGAAGAAGCCTGTAGCCGCCAAGCCCAAGCCCAAGCCCAAGCCAGCTTCCAAGGCTAAGGTTACTAAAACAACCAAGGTAGCAGCCGCGACCACCAAGAAACCGGTGAAGGCCAAGCCGGTTGCGAAGCCGAAGCCCAAGGCCAAGGCTGTTCCTGCCAAGACCAAGGCTGTTGCTACTAAGTCCAAAGCTGCTCCGGCGAAGCCCAAGCCCAAGCCCAAGCCTGCTGTTGCTGCGAAGCCAAAGCCGAAGGCAGCTGTGAAACCAAAGACGAAGGTGAGACCTGCAAAGGCTGCAAGGACCTCAACAAGGATGACCCCGGGTAGGAAAGCACCAATTTCCAAGCCGGTACCGAAGAAGGCAACGGCTGCGAAGAAAGCACCGGTGAAGAGTTTAAAGTCACCGGCGAAGAGGGCTTCATTGAAGAGAGGTGGAAGGAAGTGA 882 0.5317 MASEEPTVAVEPVPEPSSTEPLPLPEEKEETMPEAEAAPAKAKKAKDPKPKKVSAPKPRNPSSHPSYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFRKLLLNHLKKLVASEKLVKVKGSFKLPPVKSSPATASSSPAKKKKPVAAKPKPKPKPASKAKVTKTTKVAAATTKKPVKAKPVAKPKPKAKAVPAKTKAVATKSKAAPAKPKPKPKPAVAAKPKPKAAVKPKTKVRPAKAARTSTRMTPGRKAPISKPVPKKATAAKKAPVKSLKSPAKRASLKRGGRK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00061 293 MobiDBLite consensus disorder prediction 1 69 - -
Gabi3800g00061 293 PANTHER HISTONE H1 34 243 - -
Gabi3800g00061 293 MobiDBLite consensus disorder prediction 126 293 - -
Gabi3800g00061 293 PRINTS Histone H5 signature 77 94 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi3800g00061 293 PRINTS Histone H5 signature 183 200 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi3800g00061 293 PRINTS Histone H5 signature 205 224 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi3800g00061 293 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi3800g00061 293 PRINTS Histone H5 signature 50 71 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi3800g00061 293 MobiDBLite consensus disorder prediction 149 165 - -
Gabi3800g00061 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 63 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3800g00061 293 Pfam linker histone H1 and H5 family 64 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3800g00061 293 CDD H15 61 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3800g00061 293 SUPERFAMILY "Winged helix" DNA-binding domain 60 137 IPR036390 -
Gabi3800g00061 293 MobiDBLite consensus disorder prediction 22 54 - -
Gabi3800g00061 293 Gene3D - 59 137 IPR036388 -
Gabi3800g00061 293 FunFam Histone H1 58 145 - -
Gabi3800g00061 293 SMART h15plus2 61 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00061 Gabi-Chr3800 641567 642922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00061 60 132 Single Myb Histone (SMH) Gene Family AT1G72740 36.986 8.28e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00061 K11275 - cpap:110814810 145.206