Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3800g00058 | ATGGCATCAGAAGAGCCCACTATTGTGGTGGAACCCGCACCTGAGCCAGGCAGCACCGAACCACCGCCAGAGGAGAAAGAGGAACCCATGCCTGAAGCTGCACCAGCCAAGGCGGCGAAGAAAGCCAAGGATCCCAAACCTAAGAAAGTTTCTGCTCCCAAACCACGGAACCCTCCCACTCATCCTTCTTACGAAGAGATGATTAAGGATGCGATTGTGACGCTGAAGGAGAAGACAGGTTCGAGCCAATATGCGATTGCCAAGTTCATCGAAGAAAAGCATAAGCAGCTTCCTCCCAACTTCAGGAAGCTATTGCTCTACCATTTGAAGAAGCTTGTCGCTTCTGGAAAGCTCGTTAAGGTGAAAGGTTCATTCAAGCTTCCTCCAGCCAAGTCATCGCCGGCTACCGCATCATCTTCCCCAGCCAAGAAGAAGAAGCCTGCTGCTGCTAAGCCCAAGCCCAAGCCCAAGCCAAAGCCCAAATCCAAGCCTAAGCCAGCTTCCAAGGCTAAGGTTACTAGAACAACCAAGGCGGCTGCCGCGTCCACTAAGGCACCGGCGAAAGCTAAGCCTGTTGCGAAGCCGAAGCCGAAGCCTGTTCCGGCCAAAGCCAAGGCTGCTGCTTCGAAGTCCAAAGCTGCTGCAGCGAAGCCCAAGCCTAAGGCTGTTCCGGCCAAGACCAGGACTTCTGCTTCGAAGCCCAAAGCTGCTCCGGCGAAGCCCAAGCCCGCCGCCGCTGCGAAGCCTAAGGCAGCTGTGAAACCAAAGCCGAAGGCCAGACCGGCTAAGGCTGCAAGGACCTCAACGAGGACGTCTCCGGGGAAGAAAGCACCACCTTCCAAGCCAGCACCGAAAAAGGCTCCGGCTGCAAAGAAAGCACCGGTGAGGAGCGTGAAGTCTCCGGCGAAGAAGGCTTCAACGAAGAGAGGTGGAAGGAAGTGA | 942 | 0.5573 | MASEEPTIVVEPAPEPGSTEPPPEEKEEPMPEAAPAKAAKKAKDPKPKKVSAPKPRNPPTHPSYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFRKLLLYHLKKLVASGKLVKVKGSFKLPPAKSSPATASSSPAKKKKPAAAKPKPKPKPKPKSKPKPASKAKVTRTTKAAAASTKAPAKAKPVAKPKPKPVPAKAKAAASKSKAAAAKPKPKAVPAKTRTSASKPKAAPAKPKPAAAAKPKAAVKPKPKARPAKAARTSTRTSPGKKAPPSKPAPKKAPAAKKAPVRSVKSPAKKASTKRGGRK | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3800g00058 | 313 | SUPERFAMILY | "Winged helix" DNA-binding domain | 55 | 131 | IPR036390 | - | |
| Gabi3800g00058 | 313 | FunFam | Histone H1 | 55 | 140 | - | - | |
| Gabi3800g00058 | 313 | Pfam | linker histone H1 and H5 family | 61 | 127 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3800g00058 | 313 | PANTHER | HISTONE H1 | 33 | 286 | - | - | |
| Gabi3800g00058 | 313 | MobiDBLite | consensus disorder prediction | 120 | 313 | - | - | |
| Gabi3800g00058 | 313 | SMART | h15plus2 | 58 | 124 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3800g00058 | 313 | MobiDBLite | consensus disorder prediction | 146 | 170 | - | - | |
| Gabi3800g00058 | 313 | Gene3D | - | 56 | 133 | IPR036388 | - | |
| Gabi3800g00058 | 313 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
| Gabi3800g00058 | 313 | CDD | H15 | 58 | 129 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3800g00058 | 313 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 60 | 129 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Gabi3800g00058 | 313 | PRINTS | Histone H5 signature | 208 | 227 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Gabi3800g00058 | 313 | PRINTS | Histone H5 signature | 74 | 91 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Gabi3800g00058 | 313 | PRINTS | Histone H5 signature | 186 | 203 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Gabi3800g00058 | 313 | PRINTS | Histone H5 signature | 47 | 68 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Gabi3800g00058 | 313 | PRINTS | Histone H5 signature | 153 | 167 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Gabi3800g00058 | 313 | MobiDBLite | consensus disorder prediction | 20 | 51 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3800g00058 | Gabi-Chr3800 | 624333 | 625738 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3800g00058 | 62 | 129 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 38.235 | 7.14e-09 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3800g00058 | K11275 | - | zju:107425932 | 165.236 |