Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00057 ATGGCAGATGCAGAAACAGAGGTGCAAGGAGTTCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCAGAGGGGTGGATCTCGATGCGCTCTTGGACATGTCCACCGATGAACTCGTCAAGCTTTTCTCTGCACGTGCTCGCAGAAGGTTTCAACGCGGTTTGACCCGCAAGCCTATGGCACTAATCAAGAAGCTCCGTAAGGCGAAAAGGGAGGCTCCACCCGGTGAGAAGCCAGAGCCAGTTAGGACTCACCTCCGCAATATGATCATTGTGCCTGAGATGATTGGTAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATCAAGTTGAAATTAAACCAGAAATGATTGGCCACTATCTTGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCAGGTATAGGTGCTACTCACTCCTCCAGGTTCATCCCTCTCAAATGA 453 0.4812 MADAETEVQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00057 150 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 3 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 Pfam Ribosomal protein S19 48 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 FunFam 40S ribosomal protein S15 6 150 - -
Gabi3800g00057 150 ProSitePatterns Ribosomal protein S19 signature. 103 127 IPR020934 GO:0003723
Gabi3800g00057 150 SUPERFAMILY Ribosomal protein S19 53 134 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 Hamap 30S ribosomal protein S19 [rpsS]. 46 139 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 Gene3D 30s Ribosomal Protein S19; Chain A 7 150 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 PRINTS Ribosomal protein S19 family signature 83 102 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 PRINTS Ribosomal protein S19 family signature 115 130 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 PRINTS Ribosomal protein S19 family signature 103 115 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00057 150 NCBIfam 30S ribosomal protein S19 17 150 IPR005713 GO:0003735|GO:0006412|GO:0015935
Gabi3800g00057 150 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00057 Gabi-Chr3800 596058 597974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00057 1 150 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.333 3.14e-94 267