Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00056 ATGGCAGATGCAGAAACAGAGGTGCAAGGAGTTCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCAGAGGGGTGGATCTCGATGCGCTCTTGGACATGTCCACCGATGAACTCGTCAAGCTTTTCTCTGCACGTGCTCGCAGAAGGTTTCAACGCGGTTTGACCCGCAAGCCTATGGCACTAATCAAGAAGCTCCGTAAGAAAAGGGAGGCTCCACCCGGTGAGAAGCCAGAGCCAGTTAGGACTCACCTCCGCAATATGATCATTGTGCCTGAGATGATTGGTAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATCAAGTTGAAATTAAACCAGAAATGATTGGCCACTATCTTGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCAGGTATAGGTGCTACTCACTCCTCCAGGTTCATCCCTCTCAAATGA 450 0.4778 MADAETEVQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00056 149 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 3 149 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 SUPERFAMILY Ribosomal protein S19 52 133 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 Gene3D 30s Ribosomal Protein S19; Chain A 7 149 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 FunFam 40S ribosomal protein S15 6 149 - -
Gabi3800g00056 149 Pfam Ribosomal protein S19 48 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 Hamap 30S ribosomal protein S19 [rpsS]. 46 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 PRINTS Ribosomal protein S19 family signature 82 101 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 PRINTS Ribosomal protein S19 family signature 102 114 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 PRINTS Ribosomal protein S19 family signature 114 129 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 ProSitePatterns Ribosomal protein S19 signature. 102 126 IPR020934 GO:0003723
Gabi3800g00056 149 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 149 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi3800g00056 149 NCBIfam 30S ribosomal protein S19 17 149 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00056 Gabi-Chr3800 596048 597974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00056 1 149 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.667 8.30e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00056 K02958 - mnt:21407300 282.337