Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00055 ATGTCTGATATATTTGTATTAAAATGGGATCTTTTGTTAGTATTCTGGTGTGCTTGGCTTAATTCTGCCCACTCTGATTTGGGGACTTAGTTTTTTTTGTTAAAAAAAATAAAAAAAATTAACTTTTGATAGATAGAGGCTAATATGGAAGAGGTTGAACAAGTTAACAAAGCAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTTTGTTGTCTCAGCCCCGGGATCAGGTTCAGCATAGGAATTTAATGGTAGAAACTGGGGAAGCTGTGGTGAGGTTCAAGAAAGTTGTTTCCTTGCTTCACAATGGTTTGGGTCATGCAAGAGTGAAGAAATGTAAAAAACTTCAAGTCCCCTTTTCCCAAAGTATCCTCTTAGACAACCCAAATTGCCAAACCAATCATCACACAAAAAATCTGCAGTTTCCCCAAATCAGCTTTCCTGACAGTTCATTTCAGGAACTGGCCTCAACAGTTAGAAATTCACTCTCTCTAGGAAACCCATCTTTGGAATTGAGCTCCAGTGGGAAAAGTCCTCTTCACCTTACCCAACAAGCTTCATCAACTCCCTATCACTTCTTTCAGCAGCAGCAACAACAACAGCAGCAACAACAAAGGTTGTCGCTGCAACAGCAACAAATGAAACATCAAGCAGAAATGATGTTCCGAAGGAATAATAGTGGCATAAGCCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGTGTAGCTAACTTGGATGGAAGTTCCTTTCATTTAATTGGAGCTCCACACTCTTCTGATCAGAATTCACAACAGCATAAGAGAAAATGTTCTGTCAGAGGTGATGAGGGAAGCTTAAAATGTGGGAGCAGTGCTAGATGCCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTTCTGATGATTATTCATGGAGGAAGTACGGACAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTATAAGTGCAGCAGCATGAGAGGCTGTCCTGCAAGGAAGCATGTTGAGAGATGCTTGGAAGAGCCTACCATGCTAATTGTTACCTATGAAGGAGAGCATAACCACCCTAAGTTACCAACACAATCTGCAAATGCATGA 1194 0.4112 MSDIFVLKWDLLLVFWCAWLNSAHSDLGTXFFLLKKIKKINFXXIEANMEEVEQVNKAAVESCHRVLSLLSQPRDQVQHRNLMVETGEAVVRFKKVVSLLHNGLGHARVKKCKKLQVPFSQSILLDNPNCQTNHHTKNLQFPQISFPDSSFQELASTVRNSLSLGNPSLELSSSGKSPLHLTQQASSTPYHFFQQQQQQQQQQQRLSLQQQQMKHQAEMMFRRNNSGISLNFDSTSCTPTMSSTRSFISSLSIDGSVANLDGSSFHLIGAPHSSDQNSQQHKRKCSVRGDEGSLKCGSSARCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00055 397 Pfam Plant zinc cluster domain 282 327 IPR018872 -
Gabi3800g00055 397 Gene3D WRKY domain 314 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00055 397 SMART WRKY_cls 329 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00055 397 MobiDBLite consensus disorder prediction 165 188 - -
Gabi3800g00055 397 FunFam WRKY transcription factor 65 313 390 - -
Gabi3800g00055 397 SUPERFAMILY WRKY DNA-binding domain 327 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00055 397 ProSiteProfiles WRKY domain profile. 324 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00055 397 Pfam WRKY DNA -binding domain 331 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3800g00055 397 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 50 395 IPR044810 GO:0003700
Gabi3800g00055 397 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00055 Gabi-Chr3800 587858 590619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00055 49 394 WRKY Transcription Factor Family AT2G30590 58.575 6.74e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3800g00055 WRKY 4.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00055 - - gmx:100792310 613.224