Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00051 ATGGCGATGAACATGGTTAATCGATTGGTCAAAGCGAGGAGGGACACTATTGTAGCATGCATGACTTGTCCACTTTGCAATAAGTTGCTGAAGGATGCTACCACAATATCTGTATGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAATGCTGTCCAATATGCAACGTTGATTTGGGCATTGTTCCGCTTGAGAAAATGAGGCCAGATAATAGTTTACAAGACTTAAGGAACAAAATTTTCCCTTTTAAAAGAAGAAAGGTGAAGGCACCTGCAGTTGTCCCCTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCGAGGGTATCTACTAAGGTAACCTTGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCTTGCCTCTAGTTTCTCCATTGAAAAAACCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCAAGCTCACCTGACACTTCAAACAAGTCTGCAGAGAATGGTGGACAGAGGTTCTCATCTTGTGAAAATAGCCAATCCATACACAATAAAGGAACAGAGAATGGTGCTGAACCACATGAAGCAAAACTGGATCTTTGGAAACCTTTGAATTATTTAGTGGAGGCTGCAAGTAGGAGTAAATCTTTTAAGTCTAATGTGCAAGGGTCTGATGCCAAACTAGAACTCATTAAAGTAAATAACAATGATTCTCAAGTGCTGAAAGCAAAAAATAAGGAAAATAAACGCAAGGTAAAAGTTGAAGATGAAAAGACTAGCACTGATCATATCTCTTCAGATAAAGCAAAAACCAATAAATCACGCAGAGTTCGCATAAAAAAGGAACCTGATTTTGGAGAATCACGCATATCACCTCAGGCTGTTCTGGATGCTACTGACACTGAACTCTTAAGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGATATGCACCCTTGCCCCAAATTAATTCAAGTTATGTAAGAATAAGGAATGGAAACGTACCTGTCTCATTTATCCAAAAATACCTAAAGAAGAAACTAGACCTGAAAAGTGAAGATGAGGTTGAGATTATATGTATGGGACAACCAGTGCTCCCTACACTGCAGGTACAAAATTTGTTCGAGTTGTGGCTGGATATGGCATCCACAGGACAGAGAATTCCAGCAAACATAGGGTCCTCAGCAAAGGATTTTGTCATGGTCCTAAACTATGGTCGGAAGGTCCCACATCCTTGA 1299 0.398 MAMNMVNRLVKARRDTIVACMTCPLCNKLLKDATTISVCLHTFCRKCIYDKITDEELECCPICNVDLGIVPLEKMRPDNSLQDLRNKIFPFKRRKVKAPAVVPSVLLPARRKERSLSSLVVSTPRVSTKVTLTGRRTKPSRKASGLLASSFSIEKTIKKEEELLEDRQDSSSSPDTSNKSAENGGQRFSSCENSQSIHNKGTENGAEPHEAKLDLWKPLNYLVEAASRSKSFKSNVQGSDAKLELIKVNNNDSQVLKAKNKENKRKVKVEDEKTSTDHISSDKAKTNKSRRVRIKKEPDFGESRISPQAVLDATDTELLRNDSIWFSLAASENQEGYAPLPQINSSYVRIRNGNVPVSFIQKYLKKKLDLKSEDEVEIICMGQPVLPTLQVQNLFELWLDMASTGQRIPANIGSSAKDFVMVLNYGRKVPHP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00051 432 SMART ring_2 23 63 IPR001841 -
Gabi3800g00051 432 MobiDBLite consensus disorder prediction 170 202 - -
Gabi3800g00051 432 SUPERFAMILY RING/U-box 17 84 - -
Gabi3800g00051 432 MobiDBLite consensus disorder prediction 259 291 - -
Gabi3800g00051 432 CDD RING-HC_PCGF 21 64 - -
Gabi3800g00051 432 Gene3D - 307 396 - -
Gabi3800g00051 432 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Gabi3800g00051 432 Pfam Zinc finger, C3HC4 type (RING finger) 23 63 - -
Gabi3800g00051 432 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Gabi3800g00051 432 MobiDBLite consensus disorder prediction 163 210 - -
Gabi3800g00051 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 114 IPR013083 -
Gabi3800g00051 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 8 428 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00051 Gabi-Chr3800 550221 555858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00051 1 351 C3H Transcription Factor Family AT2G30580 51.275 8.36e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00051 K16277 - gmx:100778462 625.55