Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00044 ATGGAAGTTGGCCTGAAGAAGGAGAAGATGGTGTTTGAGGAAACTGAACTCAGGCTAGGATTGCCTGGGAATAATGGAAACATAGCCACTGAAGCAGCAGAATTATCTGTAAGGAAGAGAGGATTCTCTGAAACTGAGACTGAAAAAACCACTGTAGATTTGATGCTTAATCTCTCCCCAAAGGAGGTAGATGCTACTGGTGCAGATCCACGTGACAAGCACATGACTTCGCCAAAGGAGAAGACCCTTCTGCTTTCCGATCCTGCAAAGCCTCCTTCTAAGGCGCAAGTGGTGGGTTGGCCACCAGTGCGGTCTTTCCGGAAGAACATGTTTGCAGCTCAAAAGAACAGTGGAGAGGAAAACGAGAAGAACAGTCCAAATGCAAGCTTTGTCAAAGTAAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCTGAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGGCAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATGTTTTAAACAGCTCCGATTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCTTGGGAGATGTTTGTGGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 741 0.4615 MEVGLKKEKMVFEETELRLGLPGNNGNIATEAAELSVRKRGFSETETEKTTVDLMLNLSPKEVDATGADPRDKHMTSPKEKTLLLSDPAKPPSKAQVVGWPPVRSFRKNMFAAQKNSGEENEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGIKDFMNESKLMDVLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00044 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 233 IPR003311 GO:0005634|GO:0006355
Gabi3800g00044 246 MobiDBLite consensus disorder prediction 65 80 - -
Gabi3800g00044 246 MobiDBLite consensus disorder prediction 57 98 - -
Gabi3800g00044 246 Gene3D - 121 240 - -
Gabi3800g00044 246 SUPERFAMILY CAD & PB1 domains 124 227 - -
Gabi3800g00044 246 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Gabi3800g00044 246 FunFam Auxin-responsive protein 123 238 - -
Gabi3800g00044 246 Pfam AUX/IAA family 14 237 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00044 Gabi-Chr3800 453982 456650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00044 116 231 B3 DNA Binding Superfamily AT3G61830 32.759 2.91e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gabi3800g00044 AUX_IAA 2.4e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00044 K14484 - gmx:100780214 409.838