Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00043 ATGGACACAGAGATGAATCTCAAGGACACAGAGTTAAGGTTGGGATTGCCAGGAAGCGATGAGAGGGAGAAACGTTCATGCAGTTACTCATTTGTTAGAAGTAACAAGAGATCTTCACCAGAAGCAAGTGAGGAAGAGTCCATAAGCAAGAGCACCATGAATTCTGATGATTCTGATACCACAAGTGATGATGACCAAGACAATATCCCACCTGCAAAGGCACAAGTAGTGGGATGGCCTCCAATTAGATCTTATAGGAAGAATAGTGTACAACAGAAGAAGGATGAAGAGGATGAAGGGGCTGGGATGTATGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTTAAGGTTTACAAGAGCTACCCAGAACTCCTCAGGGCCTTGGAAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACCTATGAAGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGCACATGTTCATATCCTCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGTTTGGGTTGTTTTTGA 597 0.4355 MDTEMNLKDTELRLGLPGSDEREKRSCSYSFVRSNKRSSPEASEEESISKSTMNSDDSDTTSDDDQDNIPPAKAQVVGWPPIRSYRKNSVQQKKDEEDEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLRALENMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFISSCKRLRIMKGSEAKGLGCF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00043 198 Pfam AUX/IAA family 10 196 IPR033389 -
Gabi3800g00043 198 FunFam Auxin-responsive protein 97 198 - -
Gabi3800g00043 198 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Gabi3800g00043 198 SUPERFAMILY CAD & PB1 domains 98 188 - -
Gabi3800g00043 198 MobiDBLite consensus disorder prediction 1 98 - -
Gabi3800g00043 198 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3800g00043 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 193 IPR003311 GO:0005634|GO:0006355
Gabi3800g00043 198 Gene3D - 96 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00043 Gabi-Chr3800 426531 427638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00043 105 195 B3 DNA Binding Superfamily AT2G46530 38.462 5.43e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3800g00043 AUX_IAA 1.5e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00043 K14484 - gmx:100780752 327.791