Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00042 ATGGACACAGAGATGAATCTCAAGGACACAGAGTTAAGGTTGGGATTGCCAGGAAGCGATGAGAGGGAGAAACGTTCATGCAGTTACTCATTTGTTAGAAGTAACAAGAGATCTTCACCAGAAGCAAGTGAGGAAGAGTCCAATATCCCACCTGCAAAGGCACAAGTAGTGGGATGGCCTCCAATTAGATCTTATAGGAAGAATAGTGTACAACAGAAGAAGGATGAAGAGGATGAAGGGGCTGGGATGTATGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTTAAGGTTTACAAGAGCTACCCAGAACTCCTCAGGGCCTTGGAAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACCTATGAAGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGCACATGTTCATATCCTCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGTTTGGGTTGTTTTTGA 537 0.4395 MDTEMNLKDTELRLGLPGSDEREKRSCSYSFVRSNKRSSPEASEEESNIPPAKAQVVGWPPIRSYRKNSVQQKKDEEDEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLRALENMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFISSCKRLRIMKGSEAKGLGCF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00042 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 173 IPR003311 GO:0005634|GO:0006355
Gabi3800g00042 178 SUPERFAMILY CAD & PB1 domains 78 168 - -
Gabi3800g00042 178 FunFam Auxin-responsive protein 77 178 - -
Gabi3800g00042 178 Pfam AUX/IAA family 36 176 IPR033389 -
Gabi3800g00042 178 ProSiteProfiles PB1 domain profile. 82 169 IPR000270 GO:0005515
Gabi3800g00042 178 Gene3D - 76 178 - -
Gabi3800g00042 178 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3800g00042 178 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00042 Gabi-Chr3800 426531 427655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00042 68 175 B3 DNA Binding Superfamily AT2G46530 34.259 4.50e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3800g00042 AUX_IAA 1.2e-59 CL0072