Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00040 ATGGCGAGTCACCCTTCCGAGGCTCCCGCCGATGACTTCCTCGAGCAAATCCTCGGCCTCTCGACTTTCGCTTCCGCCGACTCCGCCTTGGCCGGAACCGATGCTTCTTCGTTGGCGGCTCCGCCTCCGATGATGCTGCAGCTTAACTCCGGCGACCCCGCCGCCTCCAGCCACCTCGGCGCCGGAAGTGGATTCCATGCACCGGTGTACCAGTTGGGGCTGAGTTTGGAGCAAGGTAAAGGAGGGTTCTTGAAGCCCGACGATGCTTCCGGGAGTGGCAAGCGCTTCCGCGAGGACGCTGTTGATGGCAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTAATACCATTCCTAACGCACCACATCCACCAACAATGCGTCCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCCGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGTCAGATAGAGCTGCCATGCTGGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGAGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCAAATGATGGGACAGAAAGGCAGGTAGCTAAGCTAATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATTTCACTGGCGTCAGCAATATACCAGTCACAACCATCAGACACCTCTAGCATAGTTAAGCCTGAAACTAATCCTCCTTCATAG 882 0.5272 MASHPSEAPADDFLEQILGLSTFASADSALAGTDASSLAAPPPMMLQLNSGDPAASSHLGAGSGFHAPVYQLGLSLEQGKGGFLKPDDASGSGKRFREDAVDGRAKNVFHGQPMPNTIPNAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDTSSIVKPETNPPS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00040 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983
Gabi3800g00040 293 SMART finulus 143 192 IPR011598 GO:0046983
Gabi3800g00040 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Gabi3800g00040 293 Pfam Helix-loop-helix DNA-binding domain 142 186 IPR011598 GO:0046983
Gabi3800g00040 293 MobiDBLite consensus disorder prediction 107 141 - -
Gabi3800g00040 293 FunFam Basic helix-loop-helix transcription factor 132 194 - -
Gabi3800g00040 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 272 - -
Gabi3800g00040 293 MobiDBLite consensus disorder prediction 217 236 - -
Gabi3800g00040 293 Gene3D - 132 194 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00040 Gabi-Chr3800 406773 411978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00040 65 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.426 4.16e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3800g00040 HLH 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00040 - - ccaj:109808880 481.485