Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3800g00039 ATGGCGAGTCACCCTTCCGAGGCTCCCGCCGATGACTTCCTCGAGCAAATCCTCGGCCTCTCGACTTTCGCTTCCGCCGACTCCGCCTTGGCCGGAACCGATGCTTCTTCGTTGGCGGCTCCGCCTCCGATGATGCTGCAGCTTAACTCCGGCGACCCCGCCGCCTCCAGCCACCTCGGCGCCGGAAGTGGATTCCATGCACCGGTGTACCAGTTGGGGCTGAGTTTGGAGCAAGGTAAAGGAGGGTTCTTGAAGCCCGACGATGCTTCCGGGAGTGGCAAGCGCTTCCGCGAGGACGCTGTTGATGGCAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTAATACCATTCCTAACGCACCACATCCACCAACAATGCGTCCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCCGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGTCAGATAGAGCTGCCATGCTGGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGAGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTTGAGGGTGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCAAATGATGGGACAGAAAGGCAGGTAGCTAAGCTAATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATTTCACTGGCGTCAGCAATATACCAGTCACAACCATCAGACACCTCTAGCATAGTTAAGCCTGAAACTAATCCTCCTTCATAG 867 0.5283 MASHPSEAPADDFLEQILGLSTFASADSALAGTDASSLAAPPPMMLQLNSGDPAASSHLGAGSGFHAPVYQLGLSLEQGKGGFLKPDDASGSGKRFREDAVDGRAKNVFHGQPMPNTIPNAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDTSSIVKPETNPPS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3800g00039 288 FunFam Basic helix-loop-helix transcription factor 132 194 - -
Gabi3800g00039 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983
Gabi3800g00039 288 SMART finulus 143 192 IPR011598 GO:0046983
Gabi3800g00039 288 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 267 - -
Gabi3800g00039 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Gabi3800g00039 288 MobiDBLite consensus disorder prediction 107 141 - -
Gabi3800g00039 288 Pfam Helix-loop-helix DNA-binding domain 142 186 IPR011598 GO:0046983
Gabi3800g00039 288 Gene3D - 132 194 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3800g00039 Gabi-Chr3800 406773 411979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3800g00039 65 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.149 1.09e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3800g00039 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3800g00039 - - ccaj:109808880 470.314